View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_31 (Length: 217)
Name: NF18400_low_31
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 38180574 - 38180765
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38180574 |
agaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagt |
38180673 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38180674 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatat |
38180765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 38190557 - 38190366
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38190557 |
agaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagt |
38190458 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38190457 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatat |
38190366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 38207798 - 38207989
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38207798 |
agaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagt |
38207897 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38207898 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatat |
38207989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 38217782 - 38217591
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38217782 |
agaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagt |
38217683 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38217682 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatat |
38217591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 38455934 - 38456125
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38455934 |
agaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagt |
38456033 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38456034 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatat |
38456125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 26033682 - 26033492
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
26033682 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgccgggcttatacgttgcggtaaaagt |
26033583 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctata |
202 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
26033582 |
tgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctata |
26033492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 38447040 - 38447225
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgcggtaaaagt |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || | || ||| || | ||| | |||| |
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| T |
38447040 |
agaagaggatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagt |
38447139 |
T |
|
| Q |
112 |
tgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagtt |
197 |
Q |
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|| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| ||| |||||| ||| |||| |
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| T |
38447140 |
tgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagtt |
38447225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 53352090 - 53351909
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaa-----cgaggtatcaaaaaatgctgggcttatacgttgcggta |
106 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
53352090 |
agaagaggatgaaatgttaaaagcatatgtggaaaaacatggaaccagaaattggaatggaacgaggtatcaagaaatgcggggcttatacgttgcggta |
53351991 |
T |
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| Q |
107 |
aaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagt |
188 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||||||||||||||| ||||| |
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| T |
53351990 |
aaagttgtcgtctaagatggtataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagt |
53351909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 38342337 - 38342405
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaa |
80 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| |
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| T |
38342337 |
agaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaa |
38342405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 38446530 - 38446598
Alignment:
| Q |
12 |
agaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaa |
80 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| |
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| T |
38446530 |
agaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaa |
38446598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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