View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_9 (Length: 432)
Name: NF18400_low_9
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 28476451 - 28476853
Alignment:
| Q |
18 |
gaatgtactcgtaatgtaagcataacttatctatattttaatcaaatcaatgtgtaaatccatgtatgaataacttttcatttgtttcaaatnnnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476451 |
gaatgtactcgtaatgtaagcataacttatatatattttaatcaaatcaatgtgtaaatccatgtatgaataacttttcatttgtttcaaataaaaaaaa |
28476550 |
T |
|
| Q |
118 |
ntattaataggtatggcaattgcaagggatctgttaggaaagaagaacagtgtgatttcagtgattggagatggtgccatgactgccggccaagcttatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476551 |
-tattaataggtatggcaattgcaagggatctgttaggaaagaagaacagtgtgatttcagtgattggagatggtgccatgactgccggccaagcttatg |
28476649 |
T |
|
| Q |
218 |
aggccttgaacaatgcaggattcctcgattctaacttgatagttattctgaatgacaacaagcaagtttctttgccaactgcgacacttgatggccctgc |
317 |
Q |
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| T |
28476650 |
aggccttgaacaatgcaggattcctcgattctaacttgatagttattctgaatgacaacaagcaagtttctttgccaactgcgacacttgatggccctgc |
28476749 |
T |
|
| Q |
318 |
aacaccagttggagccctaagtagtacattaagcaaaattcaagcaagcagaaaatttcgcaaacttagagaagccacgaaagtaagtccctttagaccc |
417 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476750 |
aacaccagttggagccctaagtagtactttaagcaaaattcaagcaagcagaaaatttcgcaaacttagagaagccacgaaagtaagtccctttagaccc |
28476849 |
T |
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| Q |
418 |
ctat |
421 |
Q |
| |
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|||| |
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| T |
28476850 |
ctat |
28476853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 56 - 412
Target Start/End: Original strand, 28467902 - 28468255
Alignment:
| Q |
56 |
taatcaaatcaatgtgtaaatccatgtatgaataacttttcatttgtttcaaatnnnnnnnnntattaataggtatggcaattgcaagggatctgttagg |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |
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| T |
28467902 |
taatcaaatcaatgtgtaaatccatgtatgaataacttttcatttgtttcaaataaaaaa---tattaataggtatggcagttgcaagggatctgttggg |
28467998 |
T |
|
| Q |
156 |
aaagaagaacagtgtgatttcagtgattggagatggtgccatgactgccggccaagcttatgaggccttgaacaatgcaggattcctcgattctaacttg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
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| T |
28467999 |
aaagaagaacagtgtgatttcagtgattggagatggagcaatgactgccggccaagcttatgaggccatgaacaatgcaggattcattgattctaacttg |
28468098 |
T |
|
| Q |
256 |
atagttattctgaatgacaacaagcaagtttctttgccaactgcgacacttgatggccctgcaacaccagttggagccctaagtagtacattaagcaaaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || || |||||||||| |
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| T |
28468099 |
atagttattctgaatgacaacaagcaagtttctttgccaactgcaacacttgatggccctgcaacaccagttggagccctcagcagcactttaagcaaaa |
28468198 |
T |
|
| Q |
356 |
ttcaagcaagcagaaaatttcgcaaacttagagaagccacgaaagtaagtcccttta |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28468199 |
ttcaagcaagcagaaaatttcgcaaacttagagaagcgacgaaagtaagtcccttta |
28468255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 49146276 - 49146406
Alignment:
| Q |
181 |
attggagatggtgccatgactgccggccaagcttatgaggccttgaacaatgcaggattcctcgattctaacttgatagttattctgaatgacaacaagc |
280 |
Q |
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||||| |||||||| ||||| || || |||||||| || || |||||||||| |||| || |||||| | |||| |||||| ||||||||||||| | |
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| T |
49146276 |
attggtgatggtgctatgacagcgggtcaagcttacgaagcaatgaacaatgctggatatcttgattctgatatgattgttattttgaatgacaacaaac |
49146375 |
T |
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| Q |
281 |
aagtttctttgccaactgcgacacttgatgg |
311 |
Q |
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|||||||||| |||||||| || |||||||| |
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| T |
49146376 |
aagtttctttaccaactgctactcttgatgg |
49146406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 6866326 - 6866232
Alignment:
| Q |
190 |
ggtgccatgactgccggccaagcttatgaggccttgaacaatgcaggattcctcgattctaacttgatagttattctgaatgacaacaagcaagt |
284 |
Q |
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||||||||||| ||||||||||||| ||| ||| |||||||||| || | || |||||||| |||| || ||||| ||||| ||||| ||||| |
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| T |
6866326 |
ggtgccatgaccgccggccaagcttttgaagccatgaacaatgctggttatcttaattctaacatgattgtgattctcaatgataacaaacaagt |
6866232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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