View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18401_high_12 (Length: 287)

Name: NF18401_high_12
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18401_high_12
NF18401_high_12
[»] chr7 (1 HSPs)
chr7 (1-287)||(19508028-19508314)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 19508028 - 19508314
Alignment:
Q  1 aattaaaagcaccaagaagttcaccaatttccctaacaacttttctcaattgaccaacttcatcattcatcccactactcttttttcccatagtcattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19508028 aattaaaagcaccaagaagttcaccaatttccctaacaacttttctcaattgaccaacttcatcattcatcccactactcttttttcccatagtcattct 19508127  T
Q  101 agaaatgatgttattagtatgcctaataagttcatgcctcatttcaattggtttaccatttttagatatttccaaaagggtccccataaaacactttatt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19508128 agaaatgatgttattagtatgcctaataagttcgtgcctcatttcaattggtttaccatttttagatatttccaaaagggtccccataaaacactttatt 19508227  T
Q  201 tcatcctcacgaatgtgaacaaagtgttcaagagttttcccactaagaagctcagtcatacaaagcttcttaagaaacatccaataa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19508228 tcatcctcacgaatgtgaacaaagtgttcaagagttttcccactaagaagctcagtcatacaaagcttcttaagaaacctccaataa 19508314  T

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