View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_high_14 (Length: 275)
Name: NF18401_high_14
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 27663560 - 27663315
Alignment:
| Q |
15 |
aaaatcaat-caataaatatgttcaatctaaggtcattcgtcttattatgtcattgattgtatctatcattttgagtttgcatcatttatatggtttaac |
113 |
Q |
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| T |
27663560 |
aaaatcaattcaataaatatgttcaatctaaggtcattagtcttattatgtcattgattgtatctatctttttgagtttgcatcatttatatggtttaac |
27663461 |
T |
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| Q |
114 |
attctgttgttttttcgctactagatctataatgtgtcgacaaaatctaattcatgggctaacttttcaggattgatcagatgaaaatcattgatgttgt |
213 |
Q |
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| T |
27663460 |
attctgttgttttttcgctactagatctataatgtgtcgacaaaatctaattcataggctaacttttcaggattgatcagatgaaaatcgttgatgttgt |
27663361 |
T |
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| Q |
214 |
cttgcactcctacaatttggctatcaaaatttgttctattgttcat |
259 |
Q |
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| T |
27663360 |
cttgcactcctacaatttggctatcaaaatttgttctattgttcat |
27663315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 27655688 - 27655521
Alignment:
| Q |
89 |
gtttgcatcatttatatggtttaacattctgttgttttttcgctactagatctataatgtgtcgacaaaatctaattcatgggctaacttttcaggattg |
188 |
Q |
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| T |
27655688 |
gtttgaatcttttctatggtttaatattctgttgttttttctatactaggtctataacgtggtaacaaaacctgattcatgggcaaacatttcacgattg |
27655589 |
T |
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| Q |
189 |
atcagatgaaaatcattgatgttgtcttgcactcctacaatttggctatcaaaatttgttctattgtt |
256 |
Q |
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| T |
27655588 |
atcggatggaaatcattgatgttgttttgcactcctccaacttgtctattatcatttgttcaattgtt |
27655521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 17662410 - 17662516
Alignment:
| Q |
123 |
ttttttcgctactagatctataatgtgtcgacaaaatctaattcatgggctaacttttcaggattgatcagatgaaaatcattgatgttgtcttgcactc |
222 |
Q |
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| T |
17662410 |
ttttttctctactagatctataacgaggcaaaaaaacctaattctttgactaacattgcaggattaatcgaatgaaaatcattgatgttgtcgtgcactc |
17662509 |
T |
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| Q |
223 |
ctacaat |
229 |
Q |
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|||||| |
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| T |
17662510 |
atacaat |
17662516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 17666526 - 17666624
Alignment:
| Q |
131 |
ctactagatctataatgtgtcgacaaaatctaattcatgggctaacttttcaggattgatcagatgaaaatcattgatgttgtcttgcactcctacaat |
229 |
Q |
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| T |
17666526 |
ctactagatctataacaaggcgacaaaatctaattcattgactaacatttcaggattactcgaatggaaatcattgtttttgtcgtgcactcgtacaat |
17666624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 20230707 - 20230619
Alignment:
| Q |
125 |
ttttcgctactagatctataatgtgtcgacaaaatctaattcatgggctaacttttcaggattgatcagatgaaaatcattgatgttgt |
213 |
Q |
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| T |
20230707 |
ttttctctactagatctataacgaggcaacaaaacctaattcattgactaacattgcaggattaatcaaatggaaataattgatgttgt |
20230619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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