View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_high_16 (Length: 256)
Name: NF18401_high_16
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 2581600 - 2581824
Alignment:
| Q |
20 |
accccttcattcaagagagcaggttcaagaactagttgatcatatgaagagaatacttgtgtgatggttgtgacagtgaaaatcaataagcagatcaata |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2581600 |
accctttcattcaagagagcaggttcaagaactagttgatcatatgaagtgaatacttgtgtgatggttgtgacagtgaaaatcaataagcagatcaata |
2581699 |
T |
|
| Q |
120 |
atttaattacgagcatatggtgaaaatttcattgaccaattcacaagctttgttgcttcttcattttcagtttgtgcctttgtggtaatacattatccag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2581700 |
atttaattacgagcatatggtgaaaatttcattgaccaattcacaagctttgttgcttcttcattttcagtttgtgcctttgtggtaataaattatccag |
2581799 |
T |
|
| Q |
220 |
aaatgcagagtatttctctcctctg |
244 |
Q |
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||||||||||||||||||||||||| |
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| T |
2581800 |
aaatgcagagtatttctctcctctg |
2581824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 26006221 - 26006437
Alignment:
| Q |
20 |
accccttcattcaagagagcaggttcaagaactagttgatcatatgaagagaatacttgtgtgatggttgtgacagtgaaaatcaataagcagatcaata |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||| |
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| T |
26006221 |
accccttcattcaagagagcagattcaagaactagttgatcatatgaagagaatacttgtg-gatgcttgtaacagtgaaaatcaataagttgatcaata |
26006319 |
T |
|
| Q |
120 |
atttaattacgagcatatggtgaaaatttcattgaccaattcacaagctttgttgcttc-ttcattttcagtttgtgcctttgtggtaatacattatcca |
218 |
Q |
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||||| |||| ||||| ||||||||||||| |||||||||||| |||||||||||| || ||||||||||| ||||||||||||| || |||| |
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| T |
26006320 |
atttatttacaagcatgtggtgaaaatttctttgaccaattcataagctttgttgcctctttcattttcag--------tttgtggtaataccttctcca |
26006411 |
T |
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| Q |
219 |
gaaatgcagagtatttctctcctctg |
244 |
Q |
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|||||||||| ||||||||| ||||| |
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| T |
26006412 |
gaaatgcagattatttctctgctctg |
26006437 |
T |
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