View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_high_22 (Length: 236)
Name: NF18401_high_22
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_high_22 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 11615356 - 11615538
Alignment:
| Q |
51 |
tgttagaacatgaactggtccaatgcgcagctataagtgcttatatgaataagatgttttcagcaagatgattttataacagaaacaataaaattgaagg |
150 |
Q |
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| T |
11615356 |
tgttagaacatgaactggttctatgcgcagcaataagtgcttatatgaataagctgtttt-agcaagatgagtttataaca--aacaataaaattgaagg |
11615452 |
T |
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| Q |
151 |
agagaactagaatgaatgataattggtaatgatgtgaatgtgattcatatattgagtttcacaatacaaagcctttatataggcac |
236 |
Q |
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| T |
11615453 |
agagaaatagaatgaatgatgattggtaatgatgtgaatgtgattcatattttgagtttcacaatacaaagcctttatataggcac |
11615538 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 6681734 - 6681767
Alignment:
| Q |
203 |
tgagtttcacaatacaaagcctttatataggcac |
236 |
Q |
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| T |
6681734 |
tgagtttcacaatacaaagcctttatataggcac |
6681767 |
T |
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