View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_high_27 (Length: 221)
Name: NF18401_high_27
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_high_27 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: scaffold0046 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 76376 - 76192
Alignment:
| Q |
18 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgnnnnnnnnct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
76376 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgttttttttct |
76277 |
T |
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| Q |
118 |
ttggttgtaattctttgtgcagcataattcattgaaatgtatggccatttgaaattcagtttatctttcattgtatgaagtggat |
202 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76276 |
ttggttgtaattctttgtgcagcatgattcattgaaatgtacggccatttgaaattcagtttatctttcattgtatgaagtggat |
76192 |
T |
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Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 24967055 - 24966871
Alignment:
| Q |
18 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgnnnnnnnnct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24967055 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgttttttttct |
24966956 |
T |
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| Q |
118 |
ttggttgtaattctttgtgcagcataattcattgaaatgtatggccatttgaaattcagtttatctttcattgtatgaagtggat |
202 |
Q |
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| T |
24966955 |
ttggttgtaattctttgtgcagcatgattcattgaaatgtacggccatttgaaattcagtttatctttcattgtatgaagtggat |
24966871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 28468664 - 28468847
Alignment:
| Q |
18 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgnnnnnnnnct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28468664 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctg-tttttttct |
28468762 |
T |
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| Q |
118 |
ttggttgtaattctttgtgcagcataattcattgaaatgtatggccatttgaaattcagtttatctttcattgtatgaagtggat |
202 |
Q |
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| T |
28468763 |
ttggttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggat |
28468847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 34735070 - 34734887
Alignment:
| Q |
18 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgnnnnnnnnct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34735070 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctg-tttttttct |
34734972 |
T |
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| Q |
118 |
ttggttgtaattctttgtgcagcataattcattgaaatgtatggccatttgaaattcagtttatctttcattgtatgaagtggat |
202 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34734971 |
ttggttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggat |
34734887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 29318959 - 29318776
Alignment:
| Q |
18 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgnnnnnnnnct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
29318959 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttg-tttttttct |
29318861 |
T |
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| Q |
118 |
ttggttgtaattctttgtgcagcataattcattgaaatgtatggccatttgaaattcagtttatctttcattgtatgaagtggat |
202 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29318860 |
ttggttgtaattctttgtgcaacatgattcattgaaatgtacagccatttaaaattcagtttatctttcattgtatgaagtggat |
29318776 |
T |
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