View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_high_4 (Length: 521)
Name: NF18401_high_4
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 41744114 - 41744501
Alignment:
| Q |
13 |
catcaataggtttaaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcnnnnnnn |
112 |
Q |
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| T |
41744114 |
catcaataggtttaaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcttttttt |
41744213 |
T |
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| Q |
113 |
nnactattcttatggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtaatgttattaaatatgaatcaaaa |
212 |
Q |
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| T |
41744214 |
t-actattcttatggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtcatgttattaaatatggatcaaaa |
41744312 |
T |
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| Q |
213 |
tgatgtagtcatatcgattttagttatcatatgactttgtttttcttttgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttaa |
312 |
Q |
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| T |
41744313 |
tgatgtagtcatatcgattttagttatcatatgactttgtttttcttctgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttga |
41744412 |
T |
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| Q |
313 |
cacactacaaacaaaaagaatatgcccaagattgataagtaatatcttaccttgttagctaatataatgtgattgaattagaagctaat |
401 |
Q |
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| T |
41744413 |
cacactacaaacaaaaagaatatgcccaagattgataagtaatatcttaccttgttagctaatataatgtgattgaattagaagctaat |
41744501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 397 - 506
Target Start/End: Original strand, 41746759 - 41746868
Alignment:
| Q |
397 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacatggttcaa |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41746759 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacacggttcaa |
41746858 |
T |
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| Q |
497 |
cacatatttt |
506 |
Q |
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| T |
41746859 |
cacatatttt |
41746868 |
T |
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