View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_10 (Length: 363)
Name: NF18401_low_10
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 24937054 - 24937367
Alignment:
| Q |
18 |
ataaccatatctatctatagctagggtaatgggaaacatattattatattataggatcataaaaagatattccattttagattcttataaattgagcttc |
117 |
Q |
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| T |
24937054 |
ataaccatatctatctatagctagggtaatgggaaacatattattatattataggatcataaaaagatattccattttagattcttataaattgagcttc |
24937153 |
T |
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| Q |
118 |
atgcaaaatgtaacgttggaagaatccatctgcatggtgctcggattcatgcatattacagtgggtttttagactttagaatgagacacacaaataatta |
217 |
Q |
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| T |
24937154 |
atgcaaaaggtaacgtttgaagaatccatctgcatgctgctcggattcatgcatattacagtgggtttttagactttagaataagacacacaaataatta |
24937253 |
T |
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| Q |
218 |
catcgtacaacttttcacataacataaaataaaatgaaagcataacatgcagtttgttaatcttggattaatggattatacttttgaagatacgaatcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24937254 |
catcgtacaacttttcacataacataaaataaaatgaaagcataacatgcggtttgttaatcttggattaatggattatacttttgaagatacgaatcaa |
24937353 |
T |
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| Q |
318 |
tgcattatatatat |
331 |
Q |
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| T |
24937354 |
tgcattatatatat |
24937367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 24939709 - 24939791
Alignment:
| Q |
70 |
aggatcataaaaagatattccattttagattcttataaattgagcttcatgcaaaatgtaacgttggaagaatccatctgcatg |
153 |
Q |
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|||||||||| ||||||||||||||||||| || | | || |||||||| | |||||||||||| ||||||||| |||||||| |
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| T |
24939709 |
aggatcataagaagatattccattttagatcctaa-agtttcagcttcattctaaatgtaacgtttgaagaatccgtctgcatg |
24939791 |
T |
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