View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_11 (Length: 356)
Name: NF18401_low_11
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 13897918 - 13897580
Alignment:
| Q |
2 |
tgttgatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgcca |
101 |
Q |
| |
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|||||||||| |||||| |||| |||||| |||||||| || ||||| ||||||||| |||||||| ||||| |||||| ||||||||||| ||| |
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| T |
13897918 |
tgttgatcctggttgtttacaacctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccg |
13897819 |
T |
|
| Q |
102 |
gtttgtgtatggaaggctatgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897818 |
gtttgtgtatggaaggctatgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataa |
13897719 |
T |
|
| Q |
202 |
gggaaagaaagaaagaactttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtc |
301 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13897718 |
gggcaagaaagaaagaactttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtc |
13897619 |
T |
|
| Q |
302 |
ttattcagataagtttttgagggatatttgtgtaaattt |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13897618 |
ttattcagataagtttttgagggatatttgtgtaaattt |
13897580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 13887285 - 13887631
Alignment:
| Q |
1 |
atgttgatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgcc |
100 |
Q |
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| T |
13887285 |
atgttgatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgcc |
13887384 |
T |
|
| Q |
101 |
agtttgtgtatggaaggctatgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttata |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887385 |
agtttgtgtatggaaggctatgaggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttata |
13887484 |
T |
|
| Q |
201 |
agggaaagaaagaaagaactttctttgcaaaat------gaagacaataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatg |
294 |
Q |
| |
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|||| |||||||||||||||||||||| || || ||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
13887485 |
agggcaagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatg |
13887584 |
T |
|
| Q |
295 |
gaaagtcttattcagataagtttttgagggatatttgtgtaaatttt |
341 |
Q |
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||||| |||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
13887585 |
gaaaggcttattcagataagttcttgagggatatatgtgtaagtttt |
13887631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 315
Target Start/End: Complemental strand, 7295853 - 7295637
Alignment:
| Q |
103 |
tttgtgtatggaaggctatgaggttt--cttaacttaggtatggaaagaaagctc--aagaaatcaatacaaaaagttgatgaatttgctgagaatgtta |
198 |
Q |
| |
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||||||| ||||| ||||||| |||| ||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |
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| T |
7295853 |
tttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatatta |
7295754 |
T |
|
| Q |
199 |
taagggaaagaaagaaagaactttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaa |
298 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
7295753 |
taagggcaagaaagaaggaactttctttgcaaaattaagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaatggaat |
7295654 |
T |
|
| Q |
299 |
gtcttattcagataagt |
315 |
Q |
| |
|
|| || |||||||||| |
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| T |
7295653 |
ttcatactcagataagt |
7295637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 7291746 - 7291699
Alignment:
| Q |
266 |
tgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataa |
313 |
Q |
| |
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||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
7291746 |
tgtgtttatgaggcttaaggatgagaatgaaaattcatattcagataa |
7291699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 341
Target Start/End: Complemental strand, 1034975 - 1034636
Alignment:
| Q |
2 |
tgttgatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgcca |
101 |
Q |
| |
|
|||||||||| ||| || |||| |||||| |||||||| || |||||| |||||||||| |||||||| ||||| | |||| |||||||||||| ||| |
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| T |
1034975 |
tgttgatcctggttgcttacaacctcatttgcctgaaattccctttgcaggagcttttgaggatgcaacagaagctattttgtttcgatttgtcgtgccg |
1034876 |
T |
|
| Q |
102 |
gtttgtgtatggaaggctatgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataa |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1034875 |
atttgtgtatggaaagctatgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataa |
1034776 |
T |
|
| Q |
202 |
gggaaagaaagaaagaactttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtc |
301 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034775 |
gggcaagaaagaaagaactttctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtc |
1034676 |
T |
|
| Q |
302 |
ttattcagataagtttttgagggatatttgtgtaaatttt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
1034675 |
ttattcagataagtttttgagggatatttgtgtaaatttt |
1034636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 341
Target Start/End: Complemental strand, 28667137 - 28666916
Alignment:
| Q |
120 |
atgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggaaagaaagaaagaac |
219 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| |||||||||||||| || |||||||||||||| |||||| |||||| ||||| || |||| |
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| T |
28667137 |
atgaggcttcttaacttaggtgtagaaagaaaactcaagaaatcaattaaaggggttgatgaatttgcaatgaatgtcataaggactagaaaaaaggaac |
28667038 |
T |
|
| Q |
220 |
tttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagttttt |
319 |
Q |
| |
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| T |
28667037 |
tatctttggaagttgatgaaaagaaacaaaggtcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttct |
28666938 |
T |
|
| Q |
320 |
gagggatatttgtgtaaatttt |
341 |
Q |
| |
|
||||||||| ||||| |||||| |
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|
| T |
28666937 |
gagggatatatgtgtgaatttt |
28666916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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