View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_12 (Length: 344)
Name: NF18401_low_12
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_12 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 152 - 344
Target Start/End: Complemental strand, 9069592 - 9069400
Alignment:
| Q |
152 |
tggagtatttatgaacagtacatatacggtgttgtatttgtgtgaacaaatttgtgtttgtttatcatttatattaattttaaggatccaaaaggttaca |
251 |
Q |
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| T |
9069592 |
tggagtatttatgaacagtacatatacggagttgtatttgtgtcaacaaatttgtgtttgtttatcatttatattaattttaaggatctaaaaggttaca |
9069493 |
T |
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| Q |
252 |
ttggccaccattatatggtatctgaattctctacctttcaattatctttatttaatatatttttctcaatctttctcagaatcaatcattttc |
344 |
Q |
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| T |
9069492 |
ttggccaccattatatgggatctgaattctctacctttcaatcatctgtatttaatatatttctctcaatctttctcgtaatcaatcattttc |
9069400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 9069727 - 9069648
Alignment:
| Q |
17 |
gcataggatagtggagttgataacggtggacgatggccggagatcggagttgcataaaaaagggaggtggtcgtgaatga |
96 |
Q |
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| T |
9069727 |
gcataggatagtggagttgataacggtggacgatggctggagatcggagttgcagaaaaaagggaggtggtcgtgaatga |
9069648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 8446041 - 8446005
Alignment:
| Q |
185 |
gtatttgtgtgaacaaatttgtgtttgtttatcattt |
221 |
Q |
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| T |
8446041 |
gtatttgtgtcaaaaaatttgtgtttgtttatcattt |
8446005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 8454845 - 8454809
Alignment:
| Q |
185 |
gtatttgtgtgaacaaatttgtgtttgtttatcattt |
221 |
Q |
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| T |
8454845 |
gtatttgtgtcaaaaaatttgtgtttgtttatcattt |
8454809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 45716264 - 45716305
Alignment:
| Q |
180 |
gtgttgtatttgtgtgaacaaatttgtgtttgtttatcattt |
221 |
Q |
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| T |
45716264 |
gtgttgtatttgtgtcaaataatttgtgtttgtttatcattt |
45716305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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