View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18401_low_13 (Length: 293)
Name: NF18401_low_13
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 4084848 - 4084587
Alignment:
| Q |
16 |
atgaaagcctttgtgttgnnnnnnngacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattc |
115 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084848 |
atgaaagcctttgtgttgaaaaaaagacgcgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtggcagccaaattc |
4084749 |
T |
|
| Q |
116 |
cagaatcttatctcgatggtgcaattcgtaaggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatt |
215 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084748 |
cagagtcttatctcgatggtgcaattcgtagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatt |
4084649 |
T |
|
| Q |
216 |
tatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatc |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084648 |
tatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatc |
4084587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 46 - 277
Target Start/End: Original strand, 8158656 - 8158887
Alignment:
| Q |
46 |
gaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaattcgta |
145 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| | |
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| T |
8158656 |
gaactcattgaaattgtatcagagattgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatctggatgatgcaattcgga |
8158755 |
T |
|
| Q |
146 |
aggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttgccgag |
245 |
Q |
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| T |
8158756 |
gggcaactatagcaaggaaatttgtaccaattatcataagtgatgagagatatgaggggatagaagtatttatggagggtgtaattaggtatttgccgag |
8158855 |
T |
|
| Q |
246 |
tccaatcgatgttagtaattatgctcatgatc |
277 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |
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| T |
8158856 |
tccaatcgatgttagtaattatgctcttgatc |
8158887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 18702313 - 18702076
Alignment:
| Q |
41 |
gacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaat |
140 |
Q |
| |
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|||| ||||||||||||||||| |||| ||||||||||||| ||| | ||||| |||||||||||||| |||||||||| ||| |||||||| |||||| |
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| T |
18702313 |
gacgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagcttttcatggtggcagcaaaattccagagtctgttctcgatgatgcaat |
18702214 |
T |
|
| Q |
141 |
tcgtaaggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttg |
240 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
18702213 |
tcgtagggcaactatatcaatgaaatttgtaccaattatcattggtgatgagagctatgagacgttaaaactattaatggagggtgtaattaggtatttg |
18702114 |
T |
|
| Q |
241 |
ccgagtccaatcgatgttagtaattatgctcatgatct |
278 |
Q |
| |
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|| |||||||||||||||||||||||||||| |||||| |
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| T |
18702113 |
ccaagtccaatcgatgttagtaattatgctcttgatct |
18702076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 41 - 277
Target Start/End: Complemental strand, 44302066 - 44301817
Alignment:
| Q |
41 |
gacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaat |
140 |
Q |
| |
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|||| |||||||||||||||||||| | ||||||||||||| ||| ||||||| |||||||||| |||||||||| ||| ||||||||||||| |||||| |
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| T |
44302066 |
gacgcgaactcattgaaattgtatcggaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtcttatctcgatgatgcaat |
44301967 |
T |
|
| Q |
141 |
tcgtaaggcaactatagcaaggaaatttgtaccaat---------tatcatcagtgatgagagatatgaggggttaa----aactatttatggagggtgt |
227 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
44301966 |
tcgtggggcaaccatagcaaggaaatttgtaccaatttttatgggtattatcagtggtgagagatatgaggggttaattagaactacttatggaggatgt |
44301867 |
T |
|
| Q |
228 |
aattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatc |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44301866 |
aattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatc |
44301817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 44307168 - 44306922
Alignment:
| Q |
41 |
gacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaat |
140 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||||||||||||||| |||| ||| |||||||| |||||| |
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| T |
44307168 |
gacgtgaactcattgaaattgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaat |
44307069 |
T |
|
| Q |
141 |
tcgtaaggcaactatagcaaggaaatttgtaccaattatca---------tcagtgatgagagatatgaggggttaaaactatttatggagggtgtaatt |
231 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||||| ||| ||||||||||||| |
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| T |
44307068 |
tcgtagggcaaccatagcacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaatt |
44306969 |
T |
|
| Q |
232 |
aggtatttgccgagtccaatcgatgttagtaattatgctcatgatct |
278 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
44306968 |
aggtatttgccaagtccaatcgatgttagtaattatgctcttgatct |
44306922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 46 - 277
Target Start/End: Complemental strand, 43896709 - 43896469
Alignment:
| Q |
46 |
gaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaattcgta |
145 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||| ||| ||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||| |
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|
| T |
43896709 |
gaactcattgaaatcgtctcagaggttgatgataaactttctgaagcttttcacggtggcagccaaatttcagaatctgttctcgatgatgcaattcgta |
43896610 |
T |
|
| Q |
146 |
aggcaactatagcaaggaaatttgtaccaattatc---------atcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggta |
236 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| || ||| ||||||||||| |||| |||||| ||||| |||||||||||||||||||||| |
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| T |
43896609 |
gggcaactatatcaatgaaatttgtaccaattttcatgggtgttatctgtgatgagagacatgatgggttagaactacttatggagggtgtaattaggta |
43896510 |
T |
|
| Q |
237 |
tttgccgagtccaatcgatgttagtaattatgctcatgatc |
277 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
43896509 |
tttgccgggtccaatcgatgttagtaattatgctcttgatc |
43896469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 44317345 - 44317160
Alignment:
| Q |
46 |
gaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaattcgta |
145 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| ||| ||||||| |||||||||| |||||||||| ||| ||| |||||||| ||||||||||| |
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| T |
44317345 |
gaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaattcgta |
44317246 |
T |
|
| Q |
146 |
aggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaatt |
231 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
44317245 |
gggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
44317160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 44312753 - 44312702
Alignment:
| Q |
226 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatc |
277 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatc |
44312702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 35856474 - 35856531
Alignment:
| Q |
125 |
atctcgatggtgcaattcgtaaggcaactatagcaaggaaatttgtaccaattatcat |
182 |
Q |
| |
|
|||| |||||| ||||||||| ||| || |||||||||||||||||||||||| |||| |
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|
| T |
35856474 |
atcttgatggtacaattcgtagggctacaatagcaaggaaatttgtaccaattttcat |
35856531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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