View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_16 (Length: 285)
Name: NF18401_low_16
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 12162886 - 12163082
Alignment:
| Q |
11 |
agatgaatagttaagttaaagtggtaatgaaaaaactatataaagggtgatgctacct-cattacatcaacaacaaaacccactttgggaaaaagatggg |
109 |
Q |
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| T |
12162886 |
agatgaatagttaagttaaagtggtaatgaaaaaactatataaagggtgatgctgccttcattacatcaacaacgaaacccactttgggaaaaagatggg |
12162985 |
T |
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| Q |
110 |
gtctcaaatggcctctattacactcactattgcattggcaataatctctcttgccttgccatcccaaacttcagcaaacagctacatctattcatct |
206 |
Q |
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| T |
12162986 |
gtctcaaatggcctctattactctcactattgcattggcaataatctctcttaccttgccatcccaaacttcagcaaacagctacatctattcatct |
12163082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 12210378 - 12210575
Alignment:
| Q |
11 |
agatgaatagttaagttaaagtg-gtaatgaaaaaactatataaagggtgatgctacct--cattacatcaacaacaaaacccactttgggaaaaagatg |
107 |
Q |
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| T |
12210378 |
agatgaatagttaaggtaaaatgtgtaaagaaaaaactatataaagggtgatgctatctttcataatagcaacaacaaaacacactttgggaaaat-atg |
12210476 |
T |
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| Q |
108 |
gggtctcaaatggcctctattacactcactattgcattggcaataatctctcttgccttgccatcccaaacttcagcaaacagctacatctattcatct |
206 |
Q |
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| T |
12210477 |
gggtctcaaatggcctctattactctcactattgcattggcaataatctctcttagcttcccatctcaaatttcagcaaacaattacatctattcatct |
12210575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 12192020 - 12192217
Alignment:
| Q |
11 |
agatgaatagttaagttaaagtgg-taatgaaaaaactatataaagggtgatgctacct--cattacatcaacaacaaaacccactttgggaaaaagatg |
107 |
Q |
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|||||||| ||| || |||| ||| ||| |||||||||||||||||||| | ||| || ||| | | |||||||||||| |||||| |||||| ||| |
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| T |
12192020 |
agatgaattgttgaggtaaaatggataaagaaaaaactatataaagggtactactatctttcataagagcaacaacaaaacacactttaggaaaat-atg |
12192118 |
T |
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| Q |
108 |
gggtctcaaatggcctctattacactcactattgcattggcaataatctctcttgccttgccatcccaaacttcagcaaacagctacatctattcatct |
206 |
Q |
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| T |
12192119 |
aggttccaaatggcctccattactcttactattgcattcacgataatctctcttagcctgccatcccaaatttcagcaaacaattacgtctattcatct |
12192217 |
T |
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