View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_2 (Length: 625)
Name: NF18401_low_2
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 611
Target Start/End: Original strand, 35406224 - 35406831
Alignment:
| Q |
18 |
tttcatcttcgacaactccttttacgaaaattttaagcatagttcaaagatgaataatttgactcctatttatagatagaaaatgggttgactacaatat |
117 |
Q |
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| T |
35406224 |
tttcatcttcgacaactccttttacgaaaattttaagcatagttcaaagatgaataatttgactcctatttatagatagaaaatgggttgactacaatat |
35406323 |
T |
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| Q |
118 |
ggagccctgaagctgcaagcatgccaaacaagagacataaatatggactattc--------------attttgaactgtcagtgaattgaaaaataatta |
203 |
Q |
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| T |
35406324 |
ggagccctgaagctgcaagcatgccaaacaagagagataaatatggactattctcacaccacccttcattttgaactgtcagtgaattgaaaaataatta |
35406423 |
T |
|
| Q |
204 |
cagacataaatatggtaaacctgaagtttgtgttttgcaacataagtgatactttatgtttatctagctagttgcaactacaaagtcgtctgagacgtaa |
303 |
Q |
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| T |
35406424 |
cagacataaatatggtaaacctgaagtttgtgttttgcaacataagtgataatttatgtttatctagctagttgcaactacaaagtcgtctgagacgtaa |
35406523 |
T |
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| Q |
304 |
actatatggtaaaaagtttttacttgtgttagatgatagtgtaaaatggattgagttgacatatttgataaaagttagcacattgggaagcaagatcatg |
403 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406524 |
actatatggtaaaaagtttttactagtgttagatgatagtgtaaaatggattgagttgacatatttgataaaagttagcacattgggaagcaagatcatg |
35406623 |
T |
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| Q |
404 |
gcgacaatatgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaatctctgtttgaga |
503 |
Q |
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| T |
35406624 |
gcgacaaaatgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaaaagcctttctatagaaaattgctaatctctgtttgaga |
35406723 |
T |
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| Q |
504 |
aatgggtattcaaggaagacaaagaagacaaacctccaaatctagttcaaagtacatgatttggttcatgatatatcttgctcgctatgttgcaaaagag |
603 |
Q |
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| T |
35406724 |
aatgggtattcaaggaagacgaagaagacaaacctccaaatctagttcaaagtacatgatttggtgcatgatatatcttgctctctatgttgcaaaagag |
35406823 |
T |
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| Q |
604 |
gagtttgt |
611 |
Q |
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| T |
35406824 |
gagtttgt |
35406831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 281 - 550
Target Start/End: Complemental strand, 18118051 - 18117767
Alignment:
| Q |
281 |
ctacaaagtcgtctgagacgtaaactatatggtaaaaagtttttacttgtgttagatgata---------------gtgtaaaatggattgagttgacat |
365 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| | |
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| T |
18118051 |
ctacaaagtcgtctgagacgtaaactttatggtaaaaggtttttacttgtgttagatgatatatggaatgatgattgtgtaaaatggatcgagttgaaag |
18117952 |
T |
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| Q |
366 |
atttgataaaagttagcacattgggaagcaagatcatggcgacaatatgcagcaattcaattgcattgatgatgggcattgttccgtcctatgttttaaa |
465 |
Q |
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||||||| |||||| ||||| | |||||||| |||||||||||| | ||||||| |||||||||| ||||||||| | |||||| |||||||||||||| |
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| T |
18117951 |
atttgattaaagttggcacagtaggaagcaaagtcatggcgacaacacgcagcaactcaattgcatcgatgatgggtactgttccctcctatgttttaaa |
18117852 |
T |
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| Q |
466 |
aagcctttctatagaaaattgctaatctctgtttgagaaatgggtattcaaggaagacaaagaagacaaacctccaaatctagtt |
550 |
Q |
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| |||||||||| ||||| || | |||| |||||| |||||||| ||||||||||| | ||||||||||| ||||||||||||| |
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| T |
18117851 |
aggcctttctattgaaaactgtttatctttgtttgtgaaatgggcattcaaggaaggcgaagaagacaaatatccaaatctagtt |
18117767 |
T |
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