View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_20 (Length: 252)
Name: NF18401_low_20
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_20 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 47104235 - 47104381
Alignment:
| Q |
106 |
aaatgttaataacaatatggttataccttcaatataaacagaaacataaattaaatacctatagccccatgtttgaggaatatagcactttgatcttaaa |
205 |
Q |
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||||| ||||||||||||| | ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47104235 |
aaatgctaataacaatatgatgataccttcattataaatagaaacataaattaaatacttatagccccatgtttgaggaatatagcactttgatcttaaa |
47104334 |
T |
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| Q |
206 |
tcgaatacctaaagcatcccgtgtttgaatcatagtgtttgtagtta |
252 |
Q |
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| T |
47104335 |
tcgaatacctaaagcatcccgtgtttgaatcatagtgtttgtagtta |
47104381 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 47104069 - 47104130
Alignment:
| Q |
93 |
atatattgaatacaaatgttaataacaatatggttataccttcaatataaacagaaacataa |
154 |
Q |
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| T |
47104069 |
atatattgaatacaaaagttaataacaatataattagaccttcattataaatagaaacataa |
47104130 |
T |
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Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 26010303 - 26010144
Alignment:
| Q |
93 |
atatattgaatacaaatgttaataacaatatggttataccttcaatataaacagaaacataaattaaatacctatagccccatgtttgaggaatatagca |
192 |
Q |
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|||||||||||||||||||||| | | | ||| || |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26010303 |
atatattgaatacaaatgttaaaatccacatgattgtaccttcattatcaatagaaacataaattaaatacctatagccccatgtttgaggaatataaga |
26010204 |
T |
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| Q |
193 |
ctttgatcttaaatcgaatacctaaagcatcccgtgtttgaatcatagtgtttgtagtta |
252 |
Q |
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| T |
26010203 |
ctttgatattaaatctaatacatatagtctcccgggtttgaatcatagtctttgtagtta |
26010144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 26127796 - 26127637
Alignment:
| Q |
93 |
atatattgaatacaaatgttaataacaatatggttataccttcaatataaacagaaacataaattaaatacctatagccccatgtttgaggaatatagca |
192 |
Q |
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| T |
26127796 |
atatattgaatacaaatgttaaaatcaacatgattgtaccttcattatcaatagaaacataaattaaatatctatagccccatgtttgaggaatataaga |
26127697 |
T |
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| Q |
193 |
ctttgatcttaaatcgaatacctaaagcatcccgtgtttgaatcatagtgtttgtagtta |
252 |
Q |
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| T |
26127696 |
ctttgatattaaatctaatacatatagtctcccagatttgaatcatagtctttgtagtta |
26127637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 26011471 - 26011372
Alignment:
| Q |
153 |
aaattaaatacctatagccccatgtttgaggaatatagcactttgatcttaaatcgaatacctaaagcatcccgtgtttgaatcatagtgtttgtagtta |
252 |
Q |
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| T |
26011471 |
aaattaaatatctatagccccatgtttgaggaatataagactttgatattaaatctaatacatatagtctcccaggtttgaatcatagtctttgtagtta |
26011372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 24062138 - 24062243
Alignment:
| Q |
126 |
ttataccttcaatataaacagaaacataaattaaatacctatagccccatgtttgaggaatatagcactttgatcttaaatcgaatacctaaagcatccc |
225 |
Q |
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||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| ||||||| || ||| |||| |
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| T |
24062138 |
ttataccttcattataaatagaaacataaattaaatatctatagccccatgtttgaggaatataaaactttaatctaaaaccgaatacttatagcctccc |
24062237 |
T |
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| Q |
226 |
gtgttt |
231 |
Q |
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|||||| |
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| T |
24062238 |
gtgttt |
24062243 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 31609483 - 31609398
Alignment:
| Q |
101 |
aatacaaatgttaataacaatatggttataccttcaatataaacagaaacataaattaaatacctatagccccatgtttgaggaatat |
188 |
Q |
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| T |
31609483 |
aatacaattgttaatcacaatat--ttatacctacaatataaatagaaacataaactaaatacctacagccccatgtttgaagaatat |
31609398 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 12630408 - 12630494
Alignment:
| Q |
101 |
aatacaaatgttaataacaatatggttataccttcaatataaacagaaacataaattaaatacctatag-ccccatgtttgaggaatat |
188 |
Q |
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||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||| |
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| T |
12630408 |
aatacaattgttaatcacaatat--ttatacctacaatataaatagaaacataaactaaatacctatagcccccatgtttgaagaatat |
12630494 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 45287313 - 45287383
Alignment:
| Q |
101 |
aatacaaatgttaataacaatatggttataccttcaatataaacagaaacataaattaaatacctatagcccc |
173 |
Q |
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||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| |
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| T |
45287313 |
aatacaattgttaatcacaatat--ttatacctacaatataaatagaaacataaactaaatacctatagcccc |
45287383 |
T |
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