View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_23 (Length: 245)
Name: NF18401_low_23
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12559792 - 12559558
Alignment:
| Q |
1 |
tatgtatggtttttcaatcttcattaaattaactatgagatcacattttaatatattatgcatctttcatatcaatgttgtaattttgagataaaagcac |
100 |
Q |
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| T |
12559792 |
tatgtatggtttttcaatcttcattaaattaactatgagatcacattttaatatattatgcatctttcatatcaatgttgtaattttgagataaaagcac |
12559693 |
T |
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| Q |
101 |
atgtttgacccagtaatattggtctgtgtcttgtgttttggttgtctggcatcacttgttccatgactgttgatcaatgttattagtaaatattattgta |
200 |
Q |
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| T |
12559692 |
atgtttgacccagtaatattggtctgtgtcttgtgttttggttgtctggcatcatttgtttcttgactattgatcaatgttatttgtaaatattattgta |
12559593 |
T |
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| Q |
201 |
ttcattgccttggaattttcacatatctccctatg |
235 |
Q |
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| T |
12559592 |
ttcattgccttggaattttcacatatcaccctatg |
12559558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 9291821 - 9291955
Alignment:
| Q |
5 |
tatggtttttcaatcttcattaaattaactatgagatcacattttaatatattatgcatctttcatatcaatgttgtaattttgagataaaagcacatgt |
104 |
Q |
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| T |
9291821 |
tatgatttttcaatcattattaaatcatttttgagattaaatattaatatcttataaatatttcatatcaaagttgtaattttgagacagagggacacgt |
9291920 |
T |
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| Q |
105 |
ttgacccagtaatattggtctgtgtcttgtgtttt |
139 |
Q |
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| T |
9291921 |
ttgaaccagtaattttggtttgtatcttgagtttt |
9291955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12556502 - 12556454
Alignment:
| Q |
1 |
tatgtatggtttttcaatcttcattaaattaactatgagatcacatttt |
49 |
Q |
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| T |
12556502 |
tatgtatggtttttcaatctttattaaattagctttgtgatcacatttt |
12556454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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