View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18401_low_29 (Length: 227)
Name: NF18401_low_29
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_29 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 563243 - 563457
Alignment:
| Q |
7 |
gtaatttctaagatataaaagactcaatagtcaatttaatgaaaaataaatacatattaaaatgaacaatatgatagttgtaaccaaagaacaatagtat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
563243 |
gtaatttctaagatataaaagactcaatagtcaatttcatgaaaaataaatacatattaaaatgaacaatatgatagttgtaaccaaagaacaatagtat |
563342 |
T |
|
| Q |
107 |
gataatagaatttatttttacggtcatacaaaagttaaaacagaaccaagctaagaaaaatacattacattcacattcatacgtacgtagaaaaaatatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
563343 |
gataatagaatttatttttacggtcatgcaaaagttaaaacagaaccaagctaagaaaaatacatt------gcattcatacgtacgtagaaaaaatatg |
563436 |
T |
|
| Q |
207 |
aaactaattttcatcaaaacc |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
563437 |
aaactaattttcatcaaaacc |
563457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University