View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_3 (Length: 557)
Name: NF18401_low_3
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 33353302 - 33352884
Alignment:
| Q |
18 |
aaaagtggtccttcagctttggaattcatccatgattcttctgatgatgatgaagcatctcaagttacgtctaacatctctacaaccaagccttggtcca |
117 |
Q |
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| T |
33353302 |
aaaagtggtccttcagccttggaattcatccacgattcttctgatgatgatgaagcatctcaagttacgtccaatatctctacaaccaagccttggtcca |
33353203 |
T |
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| Q |
118 |
taccacgttctgtagatgtgagtctctcacttgtttacctcaaacatgctacttgtgttgtgaggatcatataatgacaaataacatcctgactactaag |
217 |
Q |
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| T |
33353202 |
taccacgttctgtcgatgtgagtctctcacttgtttacctcaaacatgctacttgtgttgtgaggatcatataatgacaaataacatcctgactactaag |
33353103 |
T |
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| Q |
218 |
tcatgggcagtagttttaagaaattaaatcaaatattttcttacaaagtgtatataaaaatatcaaatacaaattaaaacctaaattgagacttctaatt |
317 |
Q |
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| T |
33353102 |
t-atgggcagtagttttaagaaattaaatcaaatattttcttacaaagtgtatataaaaatatcaaatacaagttaaaacctaaactgagacttctgatt |
33353004 |
T |
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| Q |
318 |
gaaagtgtgtggtacctaactacacacatatctacctttaattatttcattttcttaaattattttcaaggttgatgtgtctctgtcgtgttaggcctcc |
417 |
Q |
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| T |
33353003 |
gaaagtgtgtggta------taaacacacatctacctttaattatttcattttcctaaattatttttaaggttgatgtgtccctgtcgtgttaggcctcc |
33352910 |
T |
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| Q |
418 |
atatctacgtgaatgctagttcgtag |
443 |
Q |
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| T |
33352909 |
atatctacgtgaatgctaattcgtag |
33352884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 37436305 - 37436273
Alignment:
| Q |
354 |
tttaattatttcattttcttaaattattttcaa |
386 |
Q |
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| T |
37436305 |
tttaattatttcattttcttaaattattatcaa |
37436273 |
T |
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