View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_4 (Length: 548)
Name: NF18401_low_4
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 167 - 538
Target Start/End: Complemental strand, 35710966 - 35710592
Alignment:
| Q |
167 |
aagcaacttattcatggaacatgatattaatcatgttttagtgcataacatacgctaacagtaggaaaagctt--aatatcttataatgatgatgtatga |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
35710966 |
aagcaacttattcatggaacatgatattaatcatgttttagtgcataatatacac-aacagtaagaaa-gcttctaatatcttataatgatgatgtatga |
35710869 |
T |
|
| Q |
265 |
acaagctttgataaattcaaaagtgcatattttgcacatttgggattctgctcctgagattcacgt---aaaaaagcatcacaactttcttcattatctt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
35710868 |
acaagctttgataaattcaaaagtgcatattttgcacatttgggattctgctcctgagattcacgtgtaaaaaaagcatcacaactttcttctttatctt |
35710769 |
T |
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| Q |
362 |
ttatcgaattttttgttccaatgtggtattaagctaattgatgctaagtccggtcgtttcgcgtgacactatttagccttaccaaacattgacatatcat |
461 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35710768 |
ttttcgaattttttgttccaatgtggtattaagctaattgatgctaagtccggtcgtttcgcgtgacactattttgccttaccaaacattgacatatcat |
35710669 |
T |
|
| Q |
462 |
atcacatgcagttggtccaagttattcttttcgtttcatgtcaggttgtattgcataataccagctgctgatgatgt |
538 |
Q |
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| T |
35710668 |
atcacatgcaattggtccaagttattcttttcgtttcatgtcaggttgtattgcataataccagctgctgatgatgt |
35710592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 47104497 - 47104576
Alignment:
| Q |
78 |
aacttcaaagacttaaaatttatttcaattattctttaattttgttgatcaagagaaaggggataaaataaatcttgctt |
157 |
Q |
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| T |
47104497 |
aacttcaaagacttaaaatttatttcaattattctttaattttgttgatcaagaaaaagaggatactataaaacttgctt |
47104576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 47104362 - 47104443
Alignment:
| Q |
1 |
aatcatagtgtttgtagttaatatgaaccatacaactccattcttacacaaa-gagagaccatggtatgaaaataagaaactt |
82 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
47104362 |
aatcatagtgtttgtagttaatatga-ccatacaactccattcttatacaaaagagagaccatggtataaaaataagaaactt |
47104443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25574699 - 25574658
Alignment:
| Q |
1 |
aatcatagtgtttgtagttaatatgaaccatacaactccatt |
42 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25574699 |
aatcatagtctttgtagttaatatgaaccatacaactccatt |
25574658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26010163 - 26010122
Alignment:
| Q |
1 |
aatcatagtgtttgtagttaatatgaaccatacaactccatt |
42 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26010163 |
aatcatagtctttgtagttaatatgaaccatacaactccatt |
26010122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26011391 - 26011350
Alignment:
| Q |
1 |
aatcatagtgtttgtagttaatatgaaccatacaactccatt |
42 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26011391 |
aatcatagtctttgtagttaatatgaaccatacaactccatt |
26011350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26127656 - 26127615
Alignment:
| Q |
1 |
aatcatagtgtttgtagttaatatgaaccatacaactccatt |
42 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26127656 |
aatcatagtctttgtagttaatatgaaccatacaactccatt |
26127615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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