View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_6 (Length: 520)
Name: NF18401_low_6
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 6 - 501
Target Start/End: Original strand, 13887090 - 13887585
Alignment:
| Q |
6 |
agaagcaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887090 |
agaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
13887189 |
T |
|
| Q |
106 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13887190 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
13887289 |
T |
|
| Q |
206 |
gatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgccagttt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887290 |
gatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgccagttt |
13887389 |
T |
|
| Q |
306 |
gtgtatggaaggctatgaggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggc |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887390 |
gtgtatggaaggctatgaggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggc |
13887489 |
T |
|
| Q |
406 |
aagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatgg |
501 |
Q |
| |
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| T |
13887490 |
aagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatgg |
13887585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 501
Target Start/End: Complemental strand, 13898114 - 13897625
Alignment:
| Q |
6 |
agaagcaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
105 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||| | | ||| | ||||||||||||||||||||||||||||| |
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|
| T |
13898114 |
agaaacaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattaagtcaatttttgagcttgtgaacaataggctcatacc |
13898015 |
T |
|
| Q |
106 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
205 |
Q |
| |
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||||||||| ||||| ||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13898014 |
tgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgtt |
13897915 |
T |
|
| Q |
206 |
gatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgccagttt |
305 |
Q |
| |
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|||||| |||||| |||| |||||| |||||||| || ||||| ||||||||| |||||||| ||||| |||||| ||||||||||| ||| |||| |
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| T |
13897914 |
gatcctggttgtttacaacctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggttt |
13897815 |
T |
|
| Q |
306 |
gtgtatggaaggctatgaggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13897814 |
gtgtatggaaggctatgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggc |
13897715 |
T |
|
| Q |
406 |
aagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatgg |
501 |
Q |
| |
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|||||||||||||||||||||| || || ||||| ||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
13897714 |
aagaaagaaagaactttctttgcaaaat------gaagacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatgg |
13897625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 501
Target Start/End: Complemental strand, 7295853 - 7295657
Alignment:
| Q |
303 |
tttgtgtatggaaggctatgaggttt--cttaacttaggtatggagagaaag--ttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgtta |
398 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||||||||||||| |||||| || ||| || |||||||||||| ||||||||||||||||||| ||| |
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| T |
7295853 |
tttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatatta |
7295754 |
T |
|
| Q |
399 |
taagggcaagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaa |
498 |
Q |
| |
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|||||||||||||||| |||||||||||| || || ||||||||||| ||||||| |||||||||||||||| |||| ||||| |||||||| |
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| T |
7295753 |
taagggcaagaaagaaggaactttctttgcaaaat------taagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaa |
7295660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 501
Target Start/End: Complemental strand, 1035171 - 1034682
Alignment:
| Q |
6 |
agaagcaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
105 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||||||||||||||| |
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| T |
1035171 |
agaaacaaaggaaaatagctagtatcgagtttcattcgacaaattttagaaagttaacaaatgagtcaatttttgagcttgtgaacaataggctcatacc |
1035072 |
T |
|
| Q |
106 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
205 |
Q |
| |
|
|||||||| | ||| ||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
1035071 |
agtcttagaattatcattgaagaaaaatgttgccatagatcttcaagatattttgctgagactaacttttgataatgtttgtatgatagcttttggtgtt |
1034972 |
T |
|
| Q |
206 |
gatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgccagttt |
305 |
Q |
| |
|
|||||| ||| || |||| |||||| |||||||| || |||||| |||||||||| |||||||| ||||| | |||| |||||||||||| ||| ||| |
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|
| T |
1034971 |
gatcctggttgcttacaacctcatttgcctgaaattccctttgcaggagcttttgaggatgcaacagaagctattttgtttcgatttgtcgtgccgattt |
1034872 |
T |
|
| Q |
306 |
gtgtatggaaggctatgaggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggc |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034871 |
gtgtatggaaagctatgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggc |
1034772 |
T |
|
| Q |
406 |
aagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatgg |
501 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| |||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
1034771 |
aagaaagaaagaactttctttgcaaaat------gaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatgg |
1034682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 28667446 - 28667237
Alignment:
| Q |
11 |
caaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacctgtct |
110 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || ||||| || || |||||||||||||| |||||||||||||| | ||||| ||||||| | |
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|
| T |
28667446 |
caaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaactgattctttgtttgagcttgttcattcaaggcttttacctgttt |
28667347 |
T |
|
| Q |
111 |
tagattcatc-gttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgttgatc |
209 |
Q |
| |
|
||||| ||| ||||| ||| | | || | ||||||||||| ||| | || |||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28667346 |
tagatgaatcagttgataaaagggctgtc-acagatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttttggtgttgatc |
28667248 |
T |
|
| Q |
210 |
cttcttgtttg |
220 |
Q |
| |
|
|| ||||||| |
|
|
| T |
28667247 |
ctggttgtttg |
28667237 |
T |
|
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