View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_7 (Length: 461)
Name: NF18401_low_7
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 11199684 - 11199249
Alignment:
| Q |
12 |
atgaagcttgtcaaagagatgcttcgcgaagggtttcttccagatgaactgactatttctagcattataagttcgtgtggctatgcttctgccattaccg |
111 |
Q |
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| T |
11199684 |
atgaagcttgtcaaagagatgcttcgcgaagggtttcttccagatgaattgactatttctagcattataagttcgtgtggctatgcttctgccattaccg |
11199585 |
T |
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| Q |
112 |
aaacactgcaagtgcatgcttttgcggttaaattatcatgtcaagattttttatctgtagccaattctttgattagtgcttactccaagtgtggtagcat |
211 |
Q |
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| T |
11199584 |
aaacactgcaagtgcatgcttttgcggttaaattatcatgtcaagattttttatctgtagccaattctttgattagtgcttactccaagtgtggtagcat |
11199485 |
T |
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| Q |
212 |
tactagtgcatttaaatgctttgaattaacttcacagcctgatctagttacatggacttcattgatatatgcatatgcattccatggtcttgccgaaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11199484 |
tactagtgcatttaaatgctttgaattaacttcacagcctgatctagttacatggacttcattgatatatgcatatgcattccatggtcttgccgaaaaa |
11199385 |
T |
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| Q |
312 |
tcaactgagatgtttgagaaaatgctatcatatggcataaaaccagatcgaatcgcttttctcggcgttctctcggcttgtgctcattgtgggctggtga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11199384 |
tcaactgagatgtttgagaaaatgctatcatatggcataaaaccagatcgaatcgcttttctcggcgttctctcggcttgtgctcattgtgggctggtga |
11199285 |
T |
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| Q |
412 |
caaagggacttcactacttcaaattaatgaccaatg |
447 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11199284 |
caaagggacttcactacttcaaattaatgaccaatg |
11199249 |
T |
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