View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18401_low_8 (Length: 411)
Name: NF18401_low_8
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18401_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 159 - 395
Target Start/End: Complemental strand, 10028434 - 10028198
Alignment:
| Q |
159 |
tggtattgtgtttgaatttgctaggctagattcttatttgttatttatgttatttgggtttctaaaataatgaataaattaatgtgtgtgtatcatcact |
258 |
Q |
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| T |
10028434 |
tggtattgtgtttgaatttgctaggctagattcttatttgttatttatgttatttgggtttctaaaataatgaataaattaatgtgtgtgtatcatcact |
10028335 |
T |
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| Q |
259 |
tgctgtattattttgtagaggttgttgtttatatcatttgtataactcttgtaagctgatgttataatttctataagtaagtcattttattctatttata |
358 |
Q |
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| T |
10028334 |
tgctgtattattttgtagaggttgttgtttatatcaattgtataactcttgtaagctgatgttataatttctatatgtaagtcattttattctatttata |
10028235 |
T |
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| Q |
359 |
ttagcttaattcttgttatgcttgaagacatggtaac |
395 |
Q |
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| T |
10028234 |
ttagcttaattcttgttatgcttgaagacatggtaac |
10028198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 10028610 - 10028482
Alignment:
| Q |
15 |
atcagaagcagttttctgctaagagaaagaaatttggttttggtagattctctcttcttttgacaaaacaacaaaagaagaagaagccaactttgaactt |
114 |
Q |
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| T |
10028610 |
atcagaagcagttttctgctaagagaaagaaatttggttttggtagattctctcttcttttgacaaaacaacaaaagaagaagaagccaactttgaactt |
10028511 |
T |
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| Q |
115 |
gaggtgatgatgattcaataattacttga |
143 |
Q |
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| T |
10028510 |
gaggtgatgatgattcagtaattacttga |
10028482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 26987961 - 26988067
Alignment:
| Q |
18 |
agaagcagttttctgctaagagaaagaaatttggttttggtagattctctcttcttttgacaaaacaac---aaaagaagaagaagccaactttgaactt |
114 |
Q |
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| T |
26987961 |
agaagcagttttctgctaagagaaagaaatttgggttcgcaagattctcacatcttttgtcaaaacagcataaaaagaagaagaaaccaatgctgaactt |
26988060 |
T |
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| Q |
115 |
gaggtga |
121 |
Q |
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| T |
26988061 |
gaggtga |
26988067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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