View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18401_low_9 (Length: 382)

Name: NF18401_low_9
Description: NF18401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18401_low_9
NF18401_low_9
[»] chr5 (6 HSPs)
chr5 (17-365)||(37844846-37845194)
chr5 (17-365)||(37842979-37843327)
chr5 (81-351)||(37831877-37832147)
chr5 (17-365)||(37837354-37837702)
chr5 (80-365)||(37850694-37850979)
chr5 (265-365)||(28089842-28089942)
[»] chr1 (2 HSPs)
chr1 (80-156)||(8680131-8680207)
chr1 (29-158)||(40542126-40542255)
[»] chr8 (1 HSPs)
chr8 (104-237)||(29250525-29250658)
[»] chr7 (1 HSPs)
chr7 (17-135)||(36866265-36866383)
[»] scaffold0012 (1 HSPs)
scaffold0012 (92-176)||(52183-52264)
[»] chr6 (1 HSPs)
chr6 (92-168)||(31634106-31634179)


Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 37845194 - 37844846
Alignment:
Q  17 tgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845194 tgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaa 37845095  T
Q  117 ggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845094 ggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaag 37844995  T
Q  217 gacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844994 gacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttg 37844895  T
Q  317 tacacactacaatgtgctcccctgccaataatatagtgatcatttaggt 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844894 tacacactacaatgtgctcccctgccaataatatagtgatcatttaggt 37844846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 37843327 - 37842979
Alignment:
Q  17 tgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaa 116  Q
    |||||||  |||| ||||| ||||||||||||| ||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||    
T  37843327 tgcagatatgctagtccttcagcaattccaacaacaatcttaagccggtcactccacgtaaagagtggtggaggtttcttctcatgcaaaatatcatgaa 37843228  T
Q  117 ggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaag 216  Q
    |||||||||||| |||||||| ||| |||||||||||||| |||  ||||||||||||||  |||||||| ||||  ||| |||||||| ||||| ||||    
T  37843227 ggcttccatttttcatgaattcatacaagactaaaccatagtcctttccaatccagtagtcagcgtatttgatcacgtttcgatgcttatacattccaag 37843128  T
Q  217 gacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttg 316  Q
     ||||||||||||||| |||| | || |||  || ||    |||| |||   |||||||||||||||| |||| || | ||||||||||| | | |||||    
T  37843127 cacttcaatttcattgcacatcatacgtagccgctttaccctgttgcttgtgaattcaaacttctttacagcataaacctgttgaccaagcaaagctttg 37843028  T
Q  317 tacacactacaatgtgctcccctgccaataatatagtgatcatttaggt 365  Q
    |||||| ||| ||||||||| || ||||||||||| |||||| ||||||    
T  37843027 tacacaataccatgtgctcctcttccaataatatattgatcacttaggt 37842979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 81 - 351
Target Start/End: Complemental strand, 37832147 - 37831877
Alignment:
Q  81 gtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgc 180  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |||    
T  37832147 gtggtgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagactaaaccatattcctctccaatccagtagtctgc 37832048  T
Q  181 gtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttc 280  Q
    || ||| ||||||||| |||||||||||||  |||||||||||||||| |||   |||| ||||||  || |||| |||||||  |||||||| | ||||    
T  37832047 gtgtttgatcaaatttcgatgcttaaacatcccaaggacttcaatttcgttgcgtatgatacttagccgctttttcttgttccacccaaattcgaccttc 37831948  T
Q  281 tttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatata 351  Q
    |||| ||||||| | || ||||||| |||  ||||||||||| ||| |||| ||||| ||||||| |||||    
T  37831947 tttacagcaaaaacatgctgaccaattatggctttgtacacagtaccatgtcctcccttgccaatgatata 37831877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 37837702 - 37837354
Alignment:
Q  17 tgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaa 116  Q
    |||||||  |||| ||||||||||||||||||||| || |||| |||  |||||||  | |||||||||||||||||| | ||||||||||| |||| ||    
T  37837702 tgcagataagctagtccttgagcaattccaacagctatattaaaccgaacactccaccttaagggtggtgggggtttcatttcatgcaaaatttcataaa 37837603  T
Q  117 ggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaag 216  Q
    ||||||||||||| ||||||||||||| || ||||||||| ||   ||||||||||| |       |||| ||||||||||||||| |||       |||    
T  37837602 ggcttccattttcaatgaatttatatatgattaaaccatagtcatttccaatccagtggctccaacatttgatcaaattttgatgcctaaggcccctaag 37837503  T
Q  217 gacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttg 316  Q
    |||||||||||| |||  ||||| |||| |   | |||   |||||  |||||||||||||||||||| |||| |||| || | |  || |||  |||||    
T  37837502 gacttcaatttcgttgtccatgatacttcgccacttttgcctgttcaatccaaattcaaacttctttacagcacaagcctgctcattaattatggctttg 37837403  T
Q  317 tacacactacaatgtgctcccctgccaataatatagtgatcatttaggt 365  Q
    |||||| ||| ||||||||| || ||||||||||| |||||||||||||    
T  37837402 tacacaataccatgtgctcctcttccaataatatactgatcatttaggt 37837354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 80 - 365
Target Start/End: Complemental strand, 37850979 - 37850694
Alignment:
Q  80 ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg 179  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||   ||||||||||||||       
T  37850979 ggtggtggaggtttcttttcatgcaagatatcatgaaggcttccattttccatgaattcatataagattaaaccatagtcatttccaatccagtagtcca 37850880  T
Q  180 cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt 279  Q
       |||| || |||||| |||||||||||||  | |||||||||| ||| |||  | ||| ||||||  || |||  ||||||| ||  ||||||| |||    
T  37850879 aacatttgattaaatttcgatgcttaaacatccctaggacttcaacttcgttgcgcgtgatacttagccgcttttgcttgttccgtctgaattcaacctt 37850780  T
Q  280 ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggt 365  Q
    ||||| |||| || |   || || || |||| ||||||||||| ||| ||||||||| |  |||||||||||  ||||||||||||    
T  37850779 ctttacagcacaaacagtttcacaaattatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggt 37850694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 365
Target Start/End: Complemental strand, 28089942 - 28089842
Alignment:
Q  265 tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg 364  Q
    |||||||||||  ||||||| |||| || | ||||||||||  ||  ||||||||||| ||| ||||||||| ||||||| ||||||   ||||||||||    
T  28089942 tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttagg 28089843  T
Q  365 t 365  Q
    |    
T  28089842 t 28089842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 8680131 - 8680207
Alignment:
Q  80 ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccata 156  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  8680131 ggtggcgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagagtaaaccata 8680207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 40542255 - 40542126
Alignment:
Q  29 aatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccatttt 128  Q
    ||||||||||||||||||||||| ||||||  || | || ||||| | |||| | | || || ||||||||||||||||  |||| |||||||||||||     
T  40542255 aatccttgagcaattccaacagctatcttattcctgacattccattttaaggattgcggcggattcttctcatgcaaaacttcataaaggcttccatttg 40542156  T
Q  129 ccatgaatttatataagactaaaccataat 158  Q
     ||||||| | ||| ||| || ||||||||    
T  40542155 gcatgaatctgtatgagattagaccataat 40542126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 29250525 - 29250658
Alignment:
Q  104 aaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgct 203  Q
    |||||||||||||||||||||||||| ||||||| | | |||||||||||||| |||  ||||||||| |||| ||| ||||| ||||  |||   ||||    
T  29250525 aaaatatcatgaaggcttccattttctatgaattcaaacaagactaaaccatattcctatccaatccattagtatgcttatttgatcatgtttaattgct 29250624  T
Q  204 taaacattgcaaggacttcaatttcattgaacat 237  Q
    || ||||| ||||  |||||||||| ||| ||||    
T  29250625 tacacattccaagtgcttcaatttctttgcacat 29250658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 36866383 - 36866265
Alignment:
Q  17 tgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaa 116  Q
    |||||||  |||| ||||||||||||||||||||| |  |||| |||  || ||||  | |||||||||||||||||||| |||||||||||||  | ||    
T  36866383 tgcagataagctagtccttgagcaattccaacagctaaattaaaccgaacattccacgttaagggtggtgggggtttcttttcatgcaaaatattgtaaa 36866284  T
Q  117 ggcttccattttccatgaa 135  Q
    |||||||||| || |||||    
T  36866283 ggcttccattgtcaatgaa 36866265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 52264 - 52183
Alignment:
Q  92 ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagt 176  Q
    ||||| ||||| |||||||||||||||||||   |||||||||||| ||| |||||||||||| | | | |||||||||||||||    
T  52264 ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaataaaagactaaaccacagttctctccaatccagtagt 52183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 31634106 - 31634179
Alignment:
Q  92 ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaat 168  Q
    ||||| ||||| |||||||||||||||||||   |||||||||||| ||| |||||||||||| ||||| |||||||    
T  31634106 ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaatacaagactaaaccacaatcctctccaat 31634179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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