View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18402_high_1 (Length: 522)
Name: NF18402_high_1
Description: NF18402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18402_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Complemental strand, 11869598 - 11869086
Alignment:
| Q |
9 |
acatcatcattcacataaatggaaatatcaaaatgaacacaaaataacatgtacaaaaaagataaaccgaatctatatacaacaaacgtagaagaacaca |
108 |
Q |
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| T |
11869598 |
acatcatcattcacataaatggaaatatcaaaatgaacacaaaataacatgtacaaaaaagataaaccgaatctatatacaataaacgtagaagaacaca |
11869499 |
T |
|
| Q |
109 |
aatcttaatcagtatggttttaaattattgatctggaatatagttattgcttgccgcaactaacgatgaacagtcggtgtaatgtacctgactggccctg |
208 |
Q |
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| T |
11869498 |
aatcttaatcagtatggttttaaattattgatctggaatatagtaattgcttgccgcaactaaggatgaacagttggtgtaatgtacctgactggccctg |
11869399 |
T |
|
| Q |
209 |
tcatattcagcttcacttctagaagcatcctcaatttggaagggtaaaacgggatcagccctactcacaaaatacaatttacttgactttccacctataa |
308 |
Q |
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| T |
11869398 |
tcatattcagcttcacttctagaagcatcctcaatttggaagggtaaaacgggatcagccctactcacaaaatacaatttacttgactttccacctataa |
11869299 |
T |
|
| Q |
309 |
cgaacaaaaccacacaacacaatatcgtcataaccctaaacaatacagctcacactcc-aaatcaaattttcacaacaccacaaaattagaaaccctaaa |
407 |
Q |
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| T |
11869298 |
cgaacaaaaccacacaacacaatatcgtcataaccctaaacaatacaactcacactccaaaatcaaattttcacaacaccacaaaattagaaaccctaaa |
11869199 |
T |
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| Q |
408 |
aaactaataaaaacc----------------taataggagcagccggaatggaaacaacgccatgaacgtccaccacagactcgcggctgagagcttttg |
491 |
Q |
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| T |
11869198 |
aaactaataaaaacctgctgagtggtgcctttaataggagcagccggaatggaaacaacgccatgaacgtccaccacagactcgcggctgatagtttttg |
11869099 |
T |
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| Q |
492 |
tgaacttcaccat |
504 |
Q |
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|||||||||||| |
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| T |
11869098 |
cgaacttcaccat |
11869086 |
T |
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