View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18402_high_3 (Length: 266)

Name: NF18402_high_3
Description: NF18402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18402_high_3
NF18402_high_3
[»] chr8 (4 HSPs)
chr8 (69-137)||(8472618-8472686)
chr8 (69-136)||(32593464-32593531)
chr8 (69-133)||(541761-541825)
chr8 (69-109)||(20075586-20075626)
[»] chr7 (2 HSPs)
chr7 (69-137)||(1012240-1012308)
chr7 (69-137)||(321888-321954)
[»] chr5 (2 HSPs)
chr5 (69-134)||(4446332-4446397)
chr5 (68-121)||(22160471-22160524)
[»] chr6 (2 HSPs)
chr6 (68-121)||(20592056-20592109)
chr6 (68-121)||(19314507-19314560)
[»] chr4 (2 HSPs)
chr4 (69-137)||(37078940-37079008)
chr4 (68-109)||(30666554-30666595)
[»] chr2 (2 HSPs)
chr2 (68-121)||(817075-817128)
chr2 (2-65)||(29393063-29393126)
[»] chr1 (2 HSPs)
chr1 (68-121)||(47065085-47065138)
chr1 (68-112)||(47065837-47065881)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 8472618 - 8472686
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 137  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || ||||||||    
T  8472618 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatctt 8472686  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 32593464 - 32593531
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatct 136  Q
    ||||||||||||||||||| |||||||| ||| |||||||| ||||| ||||| |||||| |||||||    
T  32593464 ttgtaacaagcttggtgcacatgtcatgcatgttccagcttgaggagaggtgttaaaattaagaatct 32593531  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 541825 - 541761
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaa 133  Q
    |||||||||||||||||| |||||||   |||||||||||| ||||||||||| |||||| ||||    
T  541825 ttgtaacaagcttggtgcttatgtcagatatgctccagcttgaggaggggtgttaaaattaagaa 541761  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 20075586 - 20075626
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagctt 109  Q
    ||||||||||||  |||||||||||||| ||||||||||||    
T  20075586 ttgtaacaagctgtgtgcatatgtcatgtatgctccagctt 20075626  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 1012240 - 1012308
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 137  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || ||||||||    
T  1012240 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatctt 1012308  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 321888 - 321954
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 137  Q
    ||||||||||||||||||  |||||||| ||||| |||||| ||||||| ||| |||||| ||||||||    
T  321888 ttgtaacaagcttggtgc--atgtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctt 321954  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 4446332 - 4446397
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaat 134  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || |||||    
T  4446332 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaat 4446397  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 22160524 - 22160471
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 121  Q
    |||||||||||||||||| ||||| |||| ||||| |||||| |||||| ||||    
T  22160524 tttgtaacaagcttggtgtatatgacatgtatgcttcagcttgaggaggagtgt 22160471  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 20592109 - 20592056
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 121  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||| ||||    
T  20592109 tttgtaacaagcttggtgcatatgacatgtatgctccagcttgaggaggagtgt 20592056  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 19314507 - 19314560
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 121  Q
    ||||| |||||||||||||||||| || | |||||||||||| |||||| ||||    
T  19314507 tttgttacaagcttggtgcatatgacaagtatgctccagcttgaggaggagtgt 19314560  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 37078940 - 37079008
Alignment:
Q  69 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 137  Q
    ||||||||||||||||  |||||||||| ||||| |||||| ||||||||||| ||| || ||||||||    
T  37078940 ttgtaacaagcttggtttatatgtcatgtatgctacagcttgaggaggggtgttaaagttaagaatctt 37079008  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 30666554 - 30666595
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagctt 109  Q
    |||||||||||||||||||||||  |||| ||||||||||||    
T  30666554 tttgtaacaagcttggtgcatataacatgcatgctccagctt 30666595  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 817128 - 817075
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 121  Q
    |||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||    
T  817128 tttgtaacaagcttggtgcatatgacatgtatgcttcagcttgaggaggagtgt 817075  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 29393126 - 29393063
Alignment:
Q  2 ttcatcgaggtgatggtttcggtgttgctgagaaaattgctaaagtgatcgaaaatcagggcca 65  Q
    ||||||||| |||| |||| || | ||||||| |||||||| |||||||||||||||| |||||    
T  29393126 ttcatcgagttgatagtttgggcgatgctgagcaaattgctgaagtgatcgaaaatcacggcca 29393063  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 47065138 - 47065085
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 121  Q
    |||||||||||||||||||||||| |||| || | ||||||| |||| ||||||    
T  47065138 tttgtaacaagcttggtgcatatgacatgtataccccagcttgaggaagggtgt 47065085  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 47065837 - 47065881
Alignment:
Q  68 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcag 112  Q
    |||||||||| ||||||||||||| |||| |||||| ||||||||    
T  47065837 tttgtaacaaacttggtgcatatgacatgtatgctctagcttcag 47065881  T

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