View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18402_low_2 (Length: 342)
Name: NF18402_low_2
Description: NF18402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18402_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 21371541 - 21371855
Alignment:
| Q |
18 |
ggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattccttataatgc |
117 |
Q |
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| T |
21371541 |
ggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattccttataatgc |
21371640 |
T |
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| Q |
118 |
taacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371641 |
taacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttc |
21371740 |
T |
|
| Q |
218 |
atgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtggggccactcag |
317 |
Q |
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| T |
21371741 |
atgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtggggccactcag |
21371840 |
T |
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| Q |
318 |
cttattatgcctttg |
332 |
Q |
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| T |
21371841 |
cttattatgcctttg |
21371855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 21386016 - 21385702
Alignment:
| Q |
18 |
ggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattccttataatgc |
117 |
Q |
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| T |
21386016 |
ggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattccttataatgc |
21385917 |
T |
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| Q |
118 |
taacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttc |
217 |
Q |
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| T |
21385916 |
taacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttc |
21385817 |
T |
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| Q |
218 |
atgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtggggccactcag |
317 |
Q |
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| T |
21385816 |
atgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtggggccactcag |
21385717 |
T |
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| Q |
318 |
cttattatgcctttg |
332 |
Q |
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| T |
21385716 |
cttattatgcctttg |
21385702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 48674302 - 48674164
Alignment:
| Q |
157 |
atgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaat |
256 |
Q |
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||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| || || |
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| T |
48674302 |
atgcttctggatgtatagcagttaggttcatgattggtttctctttggcaacttttgtttcttaccaatattggatgagt---atgtttaataggaagat |
48674206 |
T |
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| Q |
257 |
tattggacttgctaatggtactgctgctggttggggtaatat |
298 |
Q |
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| T |
48674205 |
tattggacttgttaatgggactgctgctggttggggtaatat |
48674164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 36199810 - 36199965
Alignment:
| Q |
93 |
tatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaa-atgctgctggttatatagcagttaggtttatgatt |
191 |
Q |
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||||||||||| || |||||||||||| | || ||||||| ||||||||| |||||| |||| ||||| |||| ||||||| ||||||||| |||||| |
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| T |
36199810 |
tatggttgtgctttacttataatgctatctgctccaacag-gttttgtatttcattt--tgaatgatgcttctggatatatagtagttaggttcatgatt |
36199906 |
T |
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| Q |
192 |
ggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatag |
250 |
Q |
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| T |
36199907 |
ggtttgtctttagcaacttttgtttcttgccaatatcggacgagtaagacgtttaatag |
36199965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 691479 - 691421
Alignment:
| Q |
240 |
atgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatat |
298 |
Q |
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||||||||| | || ||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
691479 |
atgtttaattggaagattattggacttgtcaatgggactgctgctggttggggtaatat |
691421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 693271 - 693213
Alignment:
| Q |
240 |
atgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatat |
298 |
Q |
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||||||||||| | ||| ||||||||| |||||| |||||||||||| |||||||||| |
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| T |
693271 |
atgtttaataggaggattgttggacttgttaatgggactgctgctggtcggggtaatat |
693213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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