View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18402_low_6 (Length: 234)
Name: NF18402_low_6
Description: NF18402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18402_low_6 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 32309918 - 32309699
Alignment:
| Q |
15 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagctttcaacagaaaatata----------------gtgttaggaacaaaccaaaagaac |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
32309918 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaac |
32309819 |
T |
|
| Q |
99 |
ggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309818 |
ggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacct |
32309719 |
T |
|
| Q |
199 |
ttcaatgtttgatttggaat |
218 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32309718 |
ttcaatgtttgatttggaat |
32309699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 32305785 - 32305566
Alignment:
| Q |
15 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagctttcaacagaaaatata----------------gtgttaggaacaaaccaaaagaac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
32305785 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaac |
32305686 |
T |
|
| Q |
99 |
ggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacct |
198 |
Q |
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||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
32305685 |
ggaatctcttgtgacaagagcaagtatgtcagtacaagacacaacgccgggacatgcttgatccacctcctccttgatcaagtcaactttgtcaaaacct |
32305586 |
T |
|
| Q |
199 |
ttcaatgtttgatttggaat |
218 |
Q |
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|||||||||||||||||||| |
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| T |
32305585 |
ttcaatgtttgatttggaat |
32305566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 32814570 - 32814758
Alignment:
| Q |
15 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagctttcaacagaaaatatagtgttaggaacaaaccaaaagaacggaatctcttgcggca |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
32814570 |
cataggtgcataaataaagtgaaaatgcatcataattaaga---------------tatagtgctaggaacaaaccaaaagaacggaatctcttacggca |
32814654 |
T |
|
| Q |
115 |
agagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttg |
214 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32814655 |
agagcaagtatgtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttg |
32814754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 32564997 - 32565135
Alignment:
| Q |
80 |
aggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaa |
179 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
32564997 |
aggaacataccaaaagaacggaatctcttgcggcaagagcaagtatgtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaa |
32565096 |
T |
|
| Q |
180 |
gtcaactttgtcaaaacctttcaatgtttgatttggaat |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32565097 |
gtcaactttgtcaaaacctttcaatgtttgatttggaat |
32565135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 28215204 - 28215346
Alignment:
| Q |
76 |
tgttaggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
175 |
Q |
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||||| ||||||||||||| |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28215204 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttccacctcctccttaa |
28215303 |
T |
|
| Q |
176 |
tcaagtcaactttgtcaaaacctttcaatgtttgatttggaat |
218 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28215304 |
tcaagtcaactttgtcaaaaccttttaatgtttgatttggaat |
28215346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 28221052 - 28220910
Alignment:
| Q |
76 |
tgttaggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
175 |
Q |
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||||| ||||||||||||| |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
28221052 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaa |
28220953 |
T |
|
| Q |
176 |
tcaagtcaactttgtcaaaacctttcaatgtttgatttggaat |
218 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28220952 |
tcaagtcaactttgtcattacctttcaatgtttgatttggaat |
28220910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 32787366 - 32787417
Alignment:
| Q |
23 |
cataaataaagtgaaaatgcatcagaattaagagctttcaacagaaaatata |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32787366 |
cataaataaagtgaaaatgcatcagaattaagagctttcaacagaagatata |
32787417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 32564930 - 32564975
Alignment:
| Q |
29 |
taaagtgaaaatgcatcagaattaagagctttcaacagaaaatata |
74 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
32564930 |
taaagtgaaaatgcatcagaattaagagcattcaacagaagatata |
32564975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 3212 - 3155
Alignment:
| Q |
100 |
gaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgctt |
157 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||| ||||| || |||||||||| |
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| T |
3212 |
gaatctcttgcagcaagtacaagaatatcagcacaagaaacaactccaggacatgctt |
3155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 45972748 - 45972716
Alignment:
| Q |
114 |
aagagcaagtatatcagcacaagacacaacgcc |
146 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
45972748 |
aagagcaagtatatcagcacaagaaacaacgcc |
45972716 |
T |
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Back To:
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