View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_high_23 (Length: 235)
Name: NF18403_high_23
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 3347386 - 3347563
Alignment:
| Q |
42 |
aaataaatcgttaggtaaaattaagttaagataatgcatgagcannnnnnnacccatttatctatcacaatctcattgtatttt-catagaccaacactt |
140 |
Q |
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| T |
3347386 |
aaataaatcgttaggtaaaattaagttaaaatactgcatgagcattttt--acccatttatctatcacaatctcattgtatttttcatagaccaacactt |
3347483 |
T |
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| Q |
141 |
cattaaacaaactaccaacattttaaaataagacgggaattcatcataagtgtttatgtttaggcacaacaggtccaata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3347484 |
cattaaacaaactaccaacattttaaaataagacgggaattcatcataagtgtttatgtttaggcaggacaggtccaata |
3347563 |
T |
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