View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_1 (Length: 700)
Name: NF18403_low_1
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 8 - 603
Target Start/End: Original strand, 35909264 - 35909856
Alignment:
| Q |
8 |
tagcaaaggtcccaattatgtggcggttacacccaaactagaatgtgtgaattatttagcatggacttgtgccatgtgttgatacatgctatataaagca |
107 |
Q |
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| T |
35909264 |
tagcaaaggtcccaaatatgtggcggttacacccaaactagaatgtgtgaattatttagcatggacttgtgccatgtgttgatacatgctatataaagca |
35909363 |
T |
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| Q |
108 |
taattatctaaatggcaatgtgacaggttatgtcaaagagtcacaaataactcaatctcatttagaaccattgtttattcaagagcagtttgacagtctt |
207 |
Q |
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| T |
35909364 |
taattatctaaatggcaatgtgacaggttatgtcaaagagtcacaaatatctcaatctcatttagaaccattgtttattcaagagcagtttgacagtctt |
35909463 |
T |
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| Q |
208 |
gtagccttggtccctctattctgataaggtgcctcaacatcaaaccaatcatgttagctccaaagctcattttggtcataaaacaaatgaatcttattat |
307 |
Q |
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| T |
35909464 |
gtagccttggtccctctattctgataaggtgcctcaacatcaaaccaatcatg-tagctccaaagctcattttggtcataaaacaaattaatcttactat |
35909562 |
T |
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| Q |
308 |
taccacatttttctttaaatttgatatcagttttacaactatacaatcactcttattgcaatcttgaattttcttattcacaatgtatcatacaagattc |
407 |
Q |
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| T |
35909563 |
taccacatttttctttaaatttgatatcagttttacaactatacaatcactcttattgcaatcttgaattttcttattcacaatgtatcatacaagattc |
35909662 |
T |
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| Q |
408 |
caaatccaagatgattattggtttggctgagcaaatggttggattgtacaagattctagtggatgccacacaatctcaagttcagtgtttacactgataa |
507 |
Q |
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| T |
35909663 |
caaatccaagatgattattggtttggctgagcaaatgtttggaatgtacaagattctagtggatgc--cacaatctcaagttcagtgtttacactgataa |
35909760 |
T |
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| Q |
508 |
cactttactatttctaagtcagtcatatgggagaatgttgttaatgaacaagcttgtttgtgatacttgtcaaccattagcaaagctagttctaaa |
603 |
Q |
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| T |
35909761 |
cactttactatttctaagtcagtcatatgggagaatgttgttaatgaacaagcttgtttgtgatacttgtcaaacattagcaaagctagttctaaa |
35909856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 28670131 - 28670206
Alignment:
| Q |
383 |
attcacaatgtatcatacaagattccaaatccaagatgattattggtttggctgagcaaatggttggattgtacaa |
458 |
Q |
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| T |
28670131 |
attcacaatgtgtaatataggattccaaatccaggaggatgattggttttgctgagcaagtgaatggattgtacaa |
28670206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 670
Target Start/End: Complemental strand, 32494561 - 32494501
Alignment:
| Q |
610 |
gagcaagtctacaacaaggagactggaggtggattcgcaacatttctcgagaaatcaacca |
670 |
Q |
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| T |
32494561 |
gagcaagtctacaacaaggagattaaaggtggattcacagcagttgttgagaaatcaacca |
32494501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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