View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_11 (Length: 391)
Name: NF18403_low_11
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 37187724 - 37188066
Alignment:
| Q |
10 |
attattctctaaataataaggtaagagttgatcaacttccgtgaacttaatttaattagtaagtatattatatattatttgtagtggttggagtagggat |
109 |
Q |
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| T |
37187724 |
attattctctaaataataaggtaagagttgatcaacttccgtaaatttaatttaattagtaagtgtattacatattatttggagaggttggagtggggat |
37187823 |
T |
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| Q |
110 |
agagttcgaaccttaaacacggagctgttccacgtttaaatattttagctctatccagtagctactnnnnnnnn-gataagagttgatcaaaggcggtga |
208 |
Q |
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| T |
37187824 |
agagttcgaacct----------------------ttaaatattttagctctatccagtagctactaaaaaaaaagataagagttgatcaaaggcggtga |
37187901 |
T |
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| Q |
209 |
atgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggcatccacctatacca |
308 |
Q |
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| T |
37187902 |
atgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggcatccacctatacca |
37188001 |
T |
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| Q |
309 |
aatccaaccatgcctttactttacccactcctcattcctcaccaactttcaacaccccatactat |
373 |
Q |
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| T |
37188002 |
aatccaaccatgcctttactttacccactcctcattcctcaccaactttcaacaccccatactat |
37188066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 338
Target Start/End: Original strand, 53491914 - 53492053
Alignment:
| Q |
193 |
tgatcaaaggcggtgaatgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgg |
292 |
Q |
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| T |
53491914 |
tgatcaaaggcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtgg |
53492013 |
T |
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| Q |
293 |
gcatccacctataccaaatccaaccatgcctttactttacccactc |
338 |
Q |
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| T |
53492014 |
gcat-----tataccaaa-ccaaccatgtctttactttacccactc |
53492053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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