View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_12 (Length: 386)
Name: NF18403_low_12
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 3189314 - 3189669
Alignment:
| Q |
18 |
ttcagattcaagatcacaagtatcaaaggaaatggagagtgtaatggaaatatggaaagttatatacgtgaaagaaaaaatgtgttcacatcgtgtgtat |
117 |
Q |
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| T |
3189314 |
ttcagattcaagatcacaagtatcaaaggaaatggagagtgtaatggaaatatggaaagttatatacttgaaagaaaaaatatgttcacatcgtgt--at |
3189411 |
T |
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| Q |
118 |
agtgaaataaaatcggatctttgataatnnnnnnntctttctttaaagactttacgtgtatttgtatcgagactaattttactatcaaccttcgaatagt |
217 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3189412 |
agtgaaataaaatcggatctttaataataaaaaaatctttctttaaagactttacgtgtatttgtatcaagactaattttactatcaaccttcgaatagt |
3189511 |
T |
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| Q |
218 |
ggaacaaaaaacttcaagcaaacttactatgagttgcttgtgggagaagaaagtggagaaaagata-tnnnnnnnnnngtacaagtagtagtagtgtatt |
316 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||| | |
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| T |
3189512 |
ggaacaaaaaacttcgagcaaacttactatgagttgcttgtgggagaagaaagtgtagaaaagatattaaaaaaaaaagtacaagtagtagtaatgta-t |
3189610 |
T |
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| Q |
317 |
ttttattctctt-agagcttgcctatttataattataatcacatttggtctactttatt |
374 |
Q |
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|||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||| |
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| T |
3189611 |
ttttattctcttgagagtttgcctatttataattataaccatatttggtctactttatt |
3189669 |
T |
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