View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18403_low_13 (Length: 361)
Name: NF18403_low_13
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_13 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 4482806 - 4483161
Alignment:
| Q |
5 |
atagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctgggttaatgtgac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4482806 |
atagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctgggttaatgtgac |
4482905 |
T |
|
| Q |
105 |
cacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttttattaaacacttagaaaagtgaagggtgattactctactcggaattaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4482906 |
cacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttt-attaaacactttgaaaagtgaagcgtgattactctactcggaattaa |
4483004 |
T |
|
| Q |
205 |
ttttagtagctgcatcgcgcaggagtccaaaccttttgcaggcggggaaacacacatttgacacagtcacacaatttggattgttagatcaagattgaca |
304 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4483005 |
ttttagttgctgcctcgggcaggagtccaaaccttttgcaggcggggaaacacacatttgacacagtcacacaatttggactgttagatcaagattgaca |
4483104 |
T |
|
| Q |
305 |
agtccgagtcttaacattggtaagatgagataaattcggacatttgcagtccaatct |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4483105 |
agtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtccaatct |
4483161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 42796343 - 42796311
Alignment:
| Q |
77 |
ccaaatgtcactgctgggttaatgtgaccacct |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42796343 |
ccaaatgtcactgctgggttaatgtgaccacct |
42796311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University