View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_14 (Length: 294)
Name: NF18403_low_14
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 10332700 - 10332993
Alignment:
| Q |
1 |
atcaaacatggaactgatcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaag |
100 |
Q |
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| T |
10332700 |
atcaaacatggaactaatcaagcttcctggtggaaagaaagcaattgatttcaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaag |
10332799 |
T |
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| Q |
101 |
cacaaagccaggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcaggttag |
200 |
Q |
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| T |
10332800 |
cacaaagccaggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcaggttag |
10332899 |
T |
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| Q |
201 |
tcattgtagtatagcaacaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtgtt |
294 |
Q |
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| T |
10332900 |
tcattgtagtatagcaacaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtgtt |
10332993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 6372642 - 6372497
Alignment:
| Q |
33 |
gaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattctt |
132 |
Q |
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| T |
6372642 |
gaaagaaagcaatagatgtcaaatgggtcttcaagtttaaattgaaccctgacgggaagattgtgaatcaaaaagcaagacttgtggctagaggtttctt |
6372543 |
T |
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| Q |
133 |
atggaaggaaggatttaactatactaaagttttctcaccagttgca |
178 |
Q |
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| T |
6372542 |
atagaatgaaggctttgattacactgaagttttctcaccaattgca |
6372497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 14639725 - 14639885
Alignment:
| Q |
35 |
aagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattcttat |
134 |
Q |
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| T |
14639725 |
aagaaagcaatagatgttaaatgggtctttaagttgaaattgaatcctgaagggaagattgtgaagcacaaagctagacttgtggctagagttttcttga |
14639824 |
T |
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| Q |
135 |
ggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
195 |
Q |
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| T |
14639825 |
agaaggaaggctttgattatactgaagtgttctcaccagttccaagacatgaaaccatcag |
14639885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 12196666 - 12196483
Alignment:
| Q |
11 |
gaactgatcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagcca |
110 |
Q |
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| T |
12196666 |
gaactgataaagcttcgagatggaaaaaaggcaatagatataaaattggttttcaagttaaaatttaatcaagaagggaagattgtgaatcacgaagcaa |
12196567 |
T |
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| Q |
111 |
ggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
195 |
Q |
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| T |
12196566 |
ggcttttggctagaggtttatt-tagaaggaaggttttgattacactaaagttttctcaccagatgcaagacatgaaactatcag |
12196483 |
T |
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