View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_16 (Length: 286)
Name: NF18403_low_16
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 35229009 - 35228750
Alignment:
| Q |
9 |
agcacagatacgacctcaggaccaggggatgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtcattt |
108 |
Q |
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| T |
35229009 |
agcacagatacgacctcaggaccaggggatgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtccttt |
35228910 |
T |
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| Q |
109 |
tatatgcagaaacaacgtagtttctagacagcttcttgaatttcggagagagggacaaaactctgaactccaggccaaatccgaaaccccagcaaagttt |
208 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35228909 |
tatatgcagaaacaacatagtttctggacagcttcttgaaattcggagacagggacaaaactctgaactccaggccaaatctgaaaccccagcaaagttt |
35228810 |
T |
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| Q |
209 |
cttaccatgatccttacacgagaaaactaggccttgctcaaaatgtttggcccagtaaag |
268 |
Q |
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| T |
35228809 |
cttaccatgatccttacacgagaaaactaggccttgctcaaaatgtttggcccagtaaag |
35228750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 27619984 - 27619725
Alignment:
| Q |
9 |
agcacagatacgacctcaggaccaggggatgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtcattt |
108 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
27619984 |
agcacatatacgacctcaggactgggggatgcaacaatgggatcatgaggtacaattgttacatcatagtctaaaaatattgccctgcattttttccttt |
27619885 |
T |
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| Q |
109 |
tatatgcagaaacaacgtagtttctagacagcttcttgaatttcggagagagggacaaaactctgaactccaggccaaatccgaaaccccagcaaagttt |
208 |
Q |
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| T |
27619884 |
tatatgcataaacaatgtagtttctagacagcttctttaaattcggagagagggacaaaactctgacctccaggccaaagccgaaaccccagcaaagttt |
27619785 |
T |
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| Q |
209 |
cttaccatgatccttacacgagaaaactaggccttgctcaaaatgtttggcccagtaaag |
268 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
27619784 |
cttaccatgatccttacacgagaaaactaggccttgatcaaaatgttgggcccagtaaag |
27619725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 27620195 - 27620357
Alignment:
| Q |
106 |
ttttatatgcagaaacaacgtagtttctagacagcttcttgaatttcggagagagggacaaaactctgaactccaggccaaatccgaaaccccagcaaag |
205 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
27620195 |
ttttatatgcataaacaatgtagtttctagacagcttcttgaaattcggagagagggacaaaactctaaactccaggccaaagccgaaaccccagaaaag |
27620294 |
T |
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| Q |
206 |
tttcttaccatgatccttacacgagaaaactaggccttgctcaaaatgtttggcccagtaaag |
268 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
27620295 |
tttcttaccatgatacttacacgagaaaactaggccttgctcaaaatgttgggtccagtaaag |
27620357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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