View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18403_low_18 (Length: 267)
Name: NF18403_low_18
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_18 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33389927 - 33390176
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33389927 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttttatgtcgagagtttgaaatagaatttgcttttgtgc |
33390026 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390027 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
33390126 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390127 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
33390176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 33642827 - 33642578
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
33642827 |
cacgacgtagcctacgtcgtatcaaatcagttgccatgttacgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
33642728 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
|| | ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
33642727 |
ttcgagtggaccatcatgtaatctataaattttgcttacatcatcaataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagca |
33642628 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33642627 |
agggttgtcttccctattcctcccattccacaaattcctatagcacgaac |
33642578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33402469 - 33402718
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
33402469 |
cacgacgtagcctacgttgtatcaaatcaattgcactgtaacgattgcatatttgatggtgttctatgccgagagtttgatgtaggatttgcttttgtgc |
33402568 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
||| | || |||||| |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||| |||| ||| |
|
|
| T |
33402569 |
atcaattgggccatcatataatctataaattttgcttacatcatcaatgaaacaggatgcactaaatcgatgagagatttggccatataaattcatagca |
33402668 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33402669 |
agggttgtcttccctattcctcccattccacaaattcttatagcacgaac |
33402718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33273647 - 33273896
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||| |
|
|
| T |
33273647 |
cacgacatagcctacttcgtatcaaattagttacgctgtaatgattgcatatttgatggtgttctatgccgagagtttgaagtaggatttgcttttgtgc |
33273746 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
||| | ||||||||| |||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
33273747 |
atcgaggggaccatcatgtaatttataaattttgcttacatcatctataaaacaggatgcactaaatcgatgagatatttgatcatataaagccatagca |
33273846 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33273847 |
agggttgtcttccctattcctcccattccacaaattcctatagcacgaac |
33273896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 33411818 - 33412052
Alignment:
| Q |
11 |
cctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaagga |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||| |||||||||| | ||| |
|
|
| T |
33411818 |
cctacgtcgtatcaaatcagttgcactgtaacgattgcatatttgatggtgttctatgccgacagtttgaagtaggatttgcctttgtgcatcgagggga |
33411917 |
T |
|
| Q |
111 |
ccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtct |
210 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| || ||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
33411918 |
ccatcatataatctataaattttgcttacatcgtctataaaacaagatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtct |
33412017 |
T |
|
| Q |
211 |
tccctattcctcccattccacaaattcctatagca |
245 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
33412018 |
ttcctattccgcccattccacaaattccaatagca |
33412052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33306341 - 33306585
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
33306341 |
cacgacgtagcctacgtcgtatcaaatcagttgcgttgtaacgattgcttattagatggtgttctatgcctagagtttgaaataggatttgcttttgtgc |
33306440 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
|| | ||||||||| ||| ||||| |||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
33306441 |
attgagtggaccatcatgtaaactataaattttggttacatcatcaatatagcaggatgcactaaatcgatgagatatttggtcatataaagccatagca |
33306540 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33306541 |
agggttgtcttccctattcctcccattccagaaattcctatagca |
33306585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 31561014 - 31560793
Alignment:
| Q |
21 |
atcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaaggaccatcacata |
120 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||| |||||||||| ||| |||||||| ||| ||||| ||||||||||| | |||||||||| | |
|
|
| T |
31561014 |
atcaaattagttgcgctgtaatgattgcatatttgattgtgttctatgccgacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcacctg |
31560915 |
T |
|
| Q |
121 |
atctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcc |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
31560914 |
atctataaattttgcttacatcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcc |
31560815 |
T |
|
| Q |
221 |
tcccattccacaaattcctata |
242 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31560814 |
tcccattccacaaattcctata |
31560793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 33059436 - 33059667
Alignment:
| Q |
19 |
gtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaaggaccatcaca |
118 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||| | ||| ||||| |
|
|
| T |
33059436 |
gtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatg |
33059535 |
T |
|
| Q |
119 |
taatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctatt |
218 |
Q |
| |
|
||||| ||| |||||| ||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
33059536 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
33059635 |
T |
|
| Q |
219 |
cctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
33059636 |
cctcccattccacaaattcctatagcacgaac |
33059667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 9168641 - 9168878
Alignment:
| Q |
13 |
tacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaaggacc |
112 |
Q |
| |
|
|||||| |||||||| || ||| |||| ||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||| | || || |
|
|
| T |
9168641 |
tacgtcatatcaaatttgtggcactgtagcgattgcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggcc |
9168740 |
T |
|
| Q |
113 |
atcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttc |
212 |
Q |
| |
|
|||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
9168741 |
atcatgcaatctataaattttacttatatcatcaataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttc |
9168840 |
T |
|
| Q |
213 |
cctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9168841 |
cctattcctcccattccacaaattcctatagcacgaac |
9168878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 31567353 - 31567104
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||| || ||||| ||||||||||||| ||||| |||||| | | |||||||| ||| ||||| |||||||| |
|
|
| T |
31567353 |
cacgacatagccttcttcgtatcaaattagtggcgctgtaatgattgcatatttgttggtgatctatgccaacagtttgaagtaggatttgcttttgtgc |
31567254 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
||| | ||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
31567253 |
atcgaggggaccatcatatgatctataaattttgcttacatcatcaatataacaagatgcactaaatcgatgagatatttggccatataaagtctcagca |
31567154 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
31567153 |
agggctgtcttccctattccccccattccacaaattcctatagcacgaac |
31567104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33264504 - 33264753
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||| | ||||||||| ||| ||||| |||||||| |
|
|
| T |
33264504 |
cacgacttagcctatttcttatcaaatcagttgcactataatgattgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgc |
33264603 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
||| | ||||||||| ||||||| | |||||||||||||||||||| ||||| |||| |||||||||| | |||||| |||||||| |||| ||| |
|
|
| T |
33264604 |
atctattggaccatcatgtaatctaaaaattttgcttacatcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagca |
33264703 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
33264704 |
agggttgtcttccctattcctcccatcccccaaattcctatagcacgaac |
33264753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 33287397 - 33287647
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||| |||||||| | ||||||||| ||||||| || |||||||||||| ||||||| |||||| ||| ||||||| ||| |||| |||||||| |
|
|
| T |
33287397 |
cacgacgtagcctactttgtatcaaattagttgcacggtgacgattgcatatatgatggtcttctattccgacggtttgaagtaggatttccttttgtgc |
33287496 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
||| | ||||||||| ||||||| || ||||| ||||| |||||||||||| | ||||||||||||| |||||||| |||||||||| ||| | | |
|
|
| T |
33287497 |
atcgaggggaccatcatgtaatctaaattttttggcaacatcttcaataaaacaagatccactaaatcgatgggatatttgatcatataaagccatagaa |
33287596 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctatagcatgaact |
251 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33287597 |
agggttgttttccctattcctcccattccacaaattcctattgcacgaact |
33287647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 33359952 - 33360183
Alignment:
| Q |
19 |
gtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaaggaccatcaca |
118 |
Q |
| |
|
|||||||| ||||||| ||||| || |||||||| || |||||||||| ||||||||||||||| |||| ||||||||||| | ||| |||| |
|
|
| T |
33359952 |
gtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatg |
33360051 |
T |
|
| Q |
119 |
taatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctatt |
218 |
Q |
| |
|
|| ||| || ||||| ||||||||||||||||| || |||||||||| | ||||| |||||| ||||||||||| | ||||||||||| ||||| ||| |
|
|
| T |
33360052 |
tagtctgtaaattttagttacatcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaatt |
33360151 |
T |
|
| Q |
219 |
cctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |
|
|
| T |
33360152 |
cctccaattccacaaattcctatagcacgaac |
33360183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8615 - 8856
Alignment:
| Q |
1 |
cacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgc |
100 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| | ||| |||||||||||||||||||||||||| | ||||||||| ||| ||||| |||||||| |
|
|
| T |
8615 |
cacgacttagcctatgtcttatcaaatcagttgcactataatgattgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgc |
8714 |
T |
|
| Q |
101 |
atccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggca |
200 |
Q |
| |
|
||| | ||||||||| ||||||| | |||||||||||||||||||| ||||| |||| |||||||||| | |||||| |||||||| |||| ||| |
|
|
| T |
8715 |
atcaattggaccatcatgtaatctaaaaattttgcttacatcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagca |
8814 |
T |
|
| Q |
201 |
agggttgtcttccctattcctcccattccacaaattcctata |
242 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
8815 |
agggttgtcttccctattcctcccatcccccaaattcctata |
8856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 17439036 - 17438804
Alignment:
| Q |
18 |
cgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaaggaccatcac |
117 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| || | ||||||||| |
|
|
| T |
17439036 |
cgtatcaaatatgttgcactgtaacgattgcatatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcat |
17438937 |
T |
|
| Q |
118 |
ataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctat |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| |||| |||||||||||| |||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
17438936 |
gtaatctataaattttgcttacatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctat |
17438837 |
T |
|
| Q |
218 |
tcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||| || ||||||||||||||| |||| |
|
|
| T |
17438836 |
tcctcccatcccccaaattcctatagcacgaac |
17438804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 250
Target Start/End: Complemental strand, 31477130 - 31476950
Alignment:
| Q |
70 |
cgagagtttgaaatagaatttgtttttgtgcatccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcg |
169 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||| | || |||||| ||||||| | |||||||||||||||||||||||||| ||||| |||| | |
|
|
| T |
31477130 |
cgagagtttgatgtagaatttgcttttgaacatcgagtggcccatcatgtaatctaaacattttgcttacatcatcaataaaacagcatgcaccaaattg |
31477031 |
T |
|
| Q |
170 |
atgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
|||||| ||| ||||||| | |||| |||||||||||||||||||||| ||||| ||||||||||||| | ||||||| |
|
|
| T |
31477030 |
atgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattcctacaacatgaac |
31476950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 31497145 - 31496912
Alignment:
| Q |
8 |
tagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgcatccaaa |
107 |
Q |
| |
|
|||||| ||||||||||| | || ||| |||| | |||||||||| |||||||||||| | |||||||||| ||||||||| ||||| ||| | |
|
|
| T |
31497145 |
tagcctgcgtcgtatcaagttagatgcgatgtgaagattgcatatatgatggtgttcttcattgagagtttgatgtagaatttgcttttgaacattgagt |
31497046 |
T |
|
| Q |
108 |
ggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttg |
207 |
Q |
| |
|
|| |||||| ||||||| | |||||||||||||||||||||||||| |||| |||| ||| ||| |||| |||| |||| | |||||||| | |
|
|
| T |
31497045 |
ggtccatcatgtaatctaaaaattttgcttacatcatcaataaaacatcatgcatcaaattgattagagattttagcatacaaagcagtagcaagggtag |
31496946 |
T |
|
| Q |
208 |
tcttccctattcctcccattccacaaattcctat |
241 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
31496945 |
tcttccctattcctcccatcccacaaattcctat |
31496912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 31019764 - 31019882
Alignment:
| Q |
122 |
tctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcct |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |||| ||||||| ||||| ||||||||| | || || ||||||||||||||||| |
|
|
| T |
31019764 |
tctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattcca |
31019863 |
T |
|
| Q |
222 |
cccattccacaaattccta |
240 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
31019864 |
cccatcccacaaattccta |
31019882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 31489782 - 31489664
Alignment:
| Q |
122 |
tctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcct |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |||| ||||||| ||||| ||||||||| | || || ||||||||||||||||| |
|
|
| T |
31489782 |
tctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattcca |
31489683 |
T |
|
| Q |
222 |
cccattccacaaattccta |
240 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
31489682 |
cccatcccacaaattccta |
31489664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 31029645 - 31029763
Alignment:
| Q |
122 |
tctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcct |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |||| ||||||| ||||| ||||||||| | | || ||||||||||||||||| |
|
|
| T |
31029645 |
tctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattcca |
31029744 |
T |
|
| Q |
222 |
cccattccacaaattccta |
240 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
31029745 |
cccatcccacaaattccta |
31029763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 31502320 - 31502072
Alignment:
| Q |
2 |
acgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttctatgtcgagagtttgaaatagaatttgtttttgtgca |
101 |
Q |
| |
|
||||| |||||| ||||| ||||| | || |||| | || ||||||||||||||| ||||||| || | |||||| |||| ||||| ||||| || |
|
|
| T |
31502320 |
acgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttgattgtgttcttcaccgtgtgtttgatatagtatttgcttttgaaca |
31502221 |
T |
|
| Q |
102 |
tccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaa |
201 |
Q |
| |
|
| | || |||||| ||||||| | ||||||||||||||||| ||||||||| ||||| |||| ||||||| ||| ||||||| | | | ||| |
|
|
| T |
31502220 |
ccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaacatgcaccaaattgatgagaaattctatcatatagaaccctaccaa |
31502121 |
T |
|
| Q |
202 |
gggttgtcttccctattcctcccattccacaaattcctatagcatgaac |
250 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||| ||| ||||| |
|
|
| T |
31502120 |
gggttgtcttccctattccacccatcccacagattcctacagcttgaac |
31502072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 31159213 - 31159331
Alignment:
| Q |
122 |
tctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcct |
221 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| | || |||||||||||| ||| || |||||| | | ||| ||||||||||||||||| |
|
|
| T |
31159213 |
tctatatattctgcttagatcatcaataaaacaacgtacatcaaatcgatgagagattctaccacataaagcagtagtaagagttgtcttccctattcca |
31159312 |
T |
|
| Q |
222 |
cccattccacaaattccta |
240 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
31159313 |
cccatcccacaaattccta |
31159331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 31150388 - 31150430
Alignment:
| Q |
198 |
gcaagggttgtcttccctattcctcccattccacaaattccta |
240 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
31150388 |
gcaagggttgtcttccctactccacccatcccacaaattccta |
31150430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 17 - 95
Alignment:
| Q |
164 |
aaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcctata |
242 |
Q |
| |
|
|||||||||| | |||||| |||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
17 |
aaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctata |
95 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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