View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_20 (Length: 247)
Name: NF18403_low_20
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 48943218 - 48942999
Alignment:
| Q |
11 |
catcatcaccaaaatcaaacttcaaaaacaaacatccaaaatctctataaaagcaacagaaccacgtgcatgcaaagatacaataaatatccaagactat |
110 |
Q |
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| T |
48943218 |
catcatcaccaaaatcaaacttcaaaaacaaacatccaaaatctctataaaaccaacagaaccacgtgcatgcaacgatacaataaatatccaagactat |
48943119 |
T |
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| Q |
111 |
tacaacgatttttcctcacactgttagattctgattttcttagcaactaattcagcatttacagagagagagaaggaatagaaactcacggacttggagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48943118 |
tacaacgatttttcctcacactgttagattctgattttctcagcaactaattcagcatttacagaga--gagaaggaatagaaactcacggacttggagg |
48943021 |
T |
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| Q |
211 |
atttatcagaaagtgaacaatt |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
48943020 |
atttatcagaaagtgaacaatt |
48942999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 28638044 - 28638202
Alignment:
| Q |
12 |
atcatcaccaaaatcaaacttcaaaaacaaacatccaaaatctctataaaagcaacagaaccacgtgcatgcaaagatacaataaatatccaagactatt |
111 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| || ||||||||| || ||||||||| ||| |||||||||||| ||| |||||| |||||| | | |
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| T |
28638044 |
atcatcacaaaattcaaacttcaaaaacaaaaattcaaaatctccat-aaagcaacacaactacgtgcatgcaacaataaaataaacatccaaagtaaat |
28638142 |
T |
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| Q |
112 |
acaacgatttttcctcacactgttagattctgattttctt-agcaactaattcagcattt |
170 |
Q |
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|||| |||||||||||||||| |||||||| ||||| || |||||| ||||||| |||| |
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| T |
28638143 |
acaatgatttttcctcacactactagattctaatttttttcagcaaccaattcaggattt |
28638202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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