View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_22 (Length: 237)
Name: NF18403_low_22
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4483413 - 4483633
Alignment:
| Q |
1 |
tgcacctaattgattgaacaatcgatatgtgaattttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaat |
100 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483413 |
tgcacctaattgattgaacaattggtatgtgaattttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaat |
4483512 |
T |
|
| Q |
101 |
tccctgaacaccaactgaggagcatttattactggatttattcacacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483513 |
tccctgaacaccaactgaggagcatttattactggatttattcacacccatcacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactca |
4483612 |
T |
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| Q |
201 |
gcaatccctgccctatagaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4483613 |
gcaatccctgccctatagaaa |
4483633 |
T |
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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 35230845 - 35230916
Alignment:
| Q |
37 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaa |
108 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
35230845 |
tacctgagattccagcagtacagtaaacaagagcaaagatcatgccaccaaaagcccaagcaattccttgaa |
35230916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 2650083 - 2650264
Alignment:
| Q |
36 |
ttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactgg |
135 |
Q |
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|||||||| || |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| |||||| |||| |||||| | |
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| T |
2650083 |
ttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtg |
2650182 |
T |
|
| Q |
136 |
atttattcacacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctata |
217 |
Q |
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| T |
2650183 |
acctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctata |
2650264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 31460746 - 31460824
Alignment:
| Q |
37 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaac |
115 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||||||||| |||| |||||| |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattccttgaataccaac |
31460824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 40208071 - 40208111
Alignment:
| Q |
75 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
115 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||| |
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| T |
40208071 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
40208111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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