View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18403_low_23 (Length: 237)

Name: NF18403_low_23
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18403_low_23
NF18403_low_23
[»] chr4 (41 HSPs)
chr4 (1-216)||(48486112-48486327)
chr4 (1-221)||(36919912-36920131)
chr4 (1-163)||(24878835-24878997)
chr4 (5-215)||(36921824-36922033)
chr4 (1-161)||(24880299-24880459)
chr4 (3-215)||(31849926-31850138)
chr4 (1-215)||(619772-619986)
chr4 (1-218)||(3824898-3825115)
chr4 (1-221)||(11006566-11006787)
chr4 (1-182)||(22803059-22803239)
chr4 (1-216)||(38408992-38409207)
chr4 (1-212)||(5198217-5198428)
chr4 (1-211)||(24888594-24888804)
chr4 (1-218)||(51015037-51015254)
chr4 (1-215)||(5637794-5638006)
chr4 (1-221)||(22044715-22044936)
chr4 (1-213)||(40091740-40091952)
chr4 (1-210)||(52942772-52943002)
chr4 (1-221)||(9174471-9174690)
chr4 (16-216)||(18846922-18847124)
chr4 (1-111)||(37089699-37089809)
chr4 (1-215)||(9148054-9148259)
chr4 (16-215)||(9176836-9177035)
chr4 (1-89)||(11434875-11434963)
chr4 (1-93)||(47274643-47274735)
chr4 (16-111)||(11008932-11009027)
chr4 (1-108)||(22047010-22047116)
chr4 (1-88)||(7941240-7941327)
chr4 (29-221)||(16932175-16932366)
chr4 (1-105)||(8756575-8756679)
chr4 (1-89)||(22801187-22801274)
chr4 (29-221)||(22780767-22780958)
chr4 (132-215)||(7941133-7941215)
chr4 (29-215)||(22783132-22783317)
chr4 (99-182)||(22801263-22801346)
chr4 (29-215)||(16934529-16934714)
chr4 (124-215)||(11434769-11434861)
chr4 (132-221)||(22048493-22048581)
chr4 (169-221)||(16638543-16638595)
chr4 (167-214)||(47274522-47274569)
chr4 (169-215)||(16631068-16631114)
[»] chr3 (46 HSPs)
chr3 (1-215)||(32264366-32264580)
chr3 (1-217)||(18099493-18099709)
chr3 (1-216)||(26720267-26720482)
chr3 (1-215)||(1321161-1321375)
chr3 (1-214)||(5191374-5191587)
chr3 (1-217)||(5522938-5523154)
chr3 (1-218)||(10956350-10956566)
chr3 (1-217)||(22114628-22114844)
chr3 (1-215)||(48361993-48362186)
chr3 (1-111)||(10958646-10958756)
chr3 (1-215)||(24176999-24177213)
chr3 (99-217)||(32218834-32218952)
chr3 (1-89)||(10191636-10191724)
chr3 (1-89)||(18162510-18162598)
chr3 (1-89)||(10084716-10084804)
chr3 (1-221)||(18097224-18097428)
chr3 (1-111)||(3859352-3859462)
chr3 (1-111)||(45882763-45882873)
chr3 (1-89)||(11170250-11170338)
chr3 (5-88)||(11162997-11163080)
chr3 (8-89)||(32218941-32219022)
chr3 (16-221)||(6063808-6064012)
chr3 (16-89)||(38889863-38889936)
chr3 (16-215)||(53896556-53896754)
chr3 (1-89)||(24979553-24979641)
chr3 (1-89)||(35777268-35777355)
chr3 (132-221)||(7606881-7606969)
chr3 (16-160)||(5886039-5886182)
chr3 (16-89)||(6719471-6719544)
chr3 (29-216)||(38210066-38210252)
chr3 (29-215)||(50493676-50493861)
chr3 (16-111)||(25388701-25388795)
chr3 (16-108)||(5899566-5899657)
chr3 (124-215)||(11162891-11162982)
chr3 (1-48)||(15780747-15780794)
chr3 (124-221)||(11170139-11170236)
chr3 (1-60)||(12268289-12268348)
chr3 (99-152)||(24979511-24979564)
chr3 (1-60)||(46966958-46967017)
chr3 (86-162)||(10192401-10192476)
chr3 (167-215)||(45882659-45882707)
chr3 (99-162)||(10085494-10085556)
chr3 (169-215)||(18162405-18162451)
chr3 (1-35)||(38889939-38889973)
chr3 (1-89)||(6066120-6066207)
chr3 (1-41)||(13893287-13893327)
[»] chr5 (40 HSPs)
chr5 (1-217)||(21947768-21947981)
chr5 (1-215)||(20507787-20508001)
chr5 (1-215)||(38881845-38882059)
chr5 (1-215)||(16775897-16776111)
chr5 (79-221)||(20504316-20504458)
chr5 (1-211)||(4236374-4236583)
chr5 (98-216)||(12556324-12556442)
chr5 (99-205)||(2818730-2818836)
chr5 (20-221)||(34477438-34477638)
chr5 (99-221)||(659707-659828)
chr5 (1-111)||(21684786-21684896)
chr5 (1-89)||(25921798-25921886)
chr5 (16-221)||(31544792-31544997)
chr5 (1-87)||(39797956-39798042)
chr5 (1-89)||(2174785-2174873)
chr5 (29-215)||(31542442-31542628)
chr5 (1-217)||(36402653-36402847)
chr5 (2-89)||(6756360-6756447)
chr5 (117-221)||(18186489-18186593)
chr5 (99-202)||(6756268-6756371)
chr5 (116-221)||(31466397-31466502)
chr5 (1-89)||(12556248-12556336)
chr5 (1-71)||(2818661-2818731)
chr5 (1-87)||(31466303-31466389)
chr5 (29-221)||(10756954-10757145)
chr5 (29-221)||(15354880-15355071)
chr5 (80-160)||(659850-659929)
chr5 (29-215)||(10749505-10749690)
chr5 (29-111)||(15357156-15357237)
chr5 (132-216)||(34479890-34479973)
chr5 (29-111)||(23664938-23665019)
chr5 (29-111)||(23667213-23667294)
chr5 (29-111)||(23793568-23793649)
chr5 (124-215)||(39797849-39797940)
chr5 (116-215)||(25921892-25921992)
chr5 (151-216)||(21684905-21684970)
chr5 (29-111)||(31179769-31179850)
chr5 (124-215)||(2174680-2174771)
chr5 (20-89)||(34479799-34479867)
chr5 (176-215)||(661247-661286)
[»] chr1 (32 HSPs)
chr1 (1-202)||(13214834-13215035)
chr1 (1-215)||(15823286-15823500)
chr1 (1-215)||(39462258-39462473)
chr1 (1-215)||(28840418-28840632)
chr1 (1-158)||(41646717-41646874)
chr1 (1-221)||(28842227-28842447)
chr1 (1-216)||(10400155-10400370)
chr1 (1-221)||(51752098-51752319)
chr1 (1-217)||(13761575-13761791)
chr1 (1-158)||(28207393-28207550)
chr1 (1-215)||(49687301-49687494)
chr1 (1-215)||(51749778-51749993)
chr1 (1-221)||(20302192-20302413)
chr1 (4-217)||(3579948-3580161)
chr1 (2-174)||(6823664-6823837)
chr1 (1-215)||(47451405-47451602)
chr1 (1-216)||(30790721-30790936)
chr1 (99-213)||(38925882-38925996)
chr1 (17-217)||(47177076-47177274)
chr1 (2-89)||(6822881-6822968)
chr1 (17-221)||(47179422-47179625)
chr1 (17-216)||(16225886-16226083)
chr1 (1-88)||(38925805-38925892)
chr1 (148-221)||(14098443-14098516)
chr1 (1-85)||(14098297-14098380)
chr1 (99-179)||(14098373-14098453)
chr1 (124-216)||(6822774-6822867)
chr1 (29-111)||(23783363-23783444)
chr1 (16-89)||(16231446-16231518)
chr1 (167-215)||(13461344-13461392)
chr1 (1-41)||(46782966-46783006)
chr1 (132-215)||(20291280-20291362)
[»] chr2 (23 HSPs)
chr2 (1-221)||(6259140-6259360)
chr2 (1-218)||(21521020-21521237)
chr2 (1-216)||(40032383-40032587)
chr2 (1-215)||(42064231-42064445)
chr2 (1-215)||(22407734-22407948)
chr2 (1-221)||(19502336-19502556)
chr2 (1-216)||(24162537-24162753)
chr2 (1-216)||(27104514-27104729)
chr2 (1-111)||(13910369-13910479)
chr2 (1-215)||(19504670-19504884)
chr2 (1-104)||(22287661-22287764)
chr2 (1-89)||(6264470-6264558)
chr2 (1-89)||(43623893-43623980)
chr2 (99-210)||(6264547-6264658)
chr2 (29-221)||(36559173-36559364)
chr2 (124-217)||(43623994-43624087)
chr2 (1-88)||(18800627-18800713)
chr2 (116-217)||(18800720-18800821)
chr2 (29-111)||(36561450-36561531)
chr2 (29-215)||(45332490-45332675)
chr2 (1-110)||(35107121-35107230)
chr2 (1-41)||(28462611-28462651)
chr2 (169-221)||(28462798-28462850)
[»] chr8 (18 HSPs)
chr8 (1-221)||(15072500-15072720)
chr8 (1-215)||(12517351-12517565)
chr8 (1-216)||(15067776-15067991)
chr8 (1-221)||(27829087-27829307)
chr8 (1-216)||(27826781-27826996)
chr8 (16-218)||(44720614-44720816)
chr8 (1-211)||(14807552-14807761)
chr8 (20-221)||(18812662-18812862)
chr8 (1-89)||(4423940-4424028)
chr8 (1-89)||(3886243-3886334)
chr8 (1-111)||(28251892-28252001)
chr8 (1-91)||(2468423-2468513)
chr8 (77-211)||(28251988-28252122)
chr8 (20-215)||(18810483-18810677)
chr8 (124-215)||(4423835-4423926)
chr8 (68-221)||(43081716-43081869)
chr8 (68-216)||(43079346-43079494)
chr8 (1-57)||(17847482-17847538)
[»] chr7 (22 HSPs)
chr7 (1-215)||(18567363-18567577)
chr7 (1-215)||(31435372-31435586)
chr7 (1-215)||(27306554-27306767)
chr7 (1-217)||(35377-35593)
chr7 (1-221)||(44308-44528)
chr7 (1-215)||(3878322-3878535)
chr7 (1-215)||(25542281-25542495)
chr7 (1-89)||(26804450-26804537)
chr7 (1-215)||(1049620-1049813)
chr7 (29-221)||(1047318-1047509)
chr7 (1-111)||(22392327-22392437)
chr7 (124-216)||(26804344-26804436)
chr7 (1-89)||(40837067-40837156)
chr7 (29-221)||(22136872-22137063)
chr7 (29-221)||(40551899-40552090)
chr7 (29-215)||(9027502-9027687)
chr7 (29-111)||(22107971-22108052)
chr7 (29-111)||(40549731-40549812)
chr7 (29-215)||(2935070-2935255)
chr7 (167-217)||(22392290-22392340)
chr7 (1-60)||(45366451-45366510)
chr7 (132-220)||(40837179-40837266)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-221)||(2623-2843)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-214)||(14768-14982)
[»] chr6 (25 HSPs)
chr6 (1-215)||(8995255-8995468)
chr6 (1-215)||(9019702-9019915)
chr6 (1-215)||(15530447-15530661)
chr6 (1-216)||(19227733-19227949)
chr6 (1-215)||(14507500-14507716)
chr6 (1-132)||(30729153-30729284)
chr6 (1-216)||(11983354-11983567)
chr6 (1-221)||(15533006-15533226)
chr6 (99-215)||(1072279-1072395)
chr6 (20-158)||(4816612-4816749)
chr6 (1-132)||(15541465-15541596)
chr6 (29-221)||(33310948-33311139)
chr6 (1-89)||(1072202-1072290)
chr6 (1-89)||(32279898-32279986)
chr6 (29-218)||(33308682-33308870)
chr6 (11-111)||(24192630-24192730)
chr6 (11-111)||(24191533-24191633)
chr6 (29-215)||(29755094-29755279)
chr6 (123-215)||(32279794-32279885)
chr6 (29-221)||(26066426-26066617)
chr6 (29-215)||(26068697-26068882)
chr6 (167-215)||(15541631-15541679)
chr6 (167-215)||(24191620-24191668)
chr6 (167-215)||(24192717-24192765)
chr6 (167-221)||(30729298-30729352)
[»] scaffold0025 (3 HSPs)
scaffold0025 (5-221)||(69624-69839)
scaffold0025 (1-88)||(73352-73438)
scaffold0025 (125-217)||(73454-73546)
[»] scaffold0068 (2 HSPs)
scaffold0068 (1-111)||(29014-29124)
scaffold0068 (151-216)||(28940-29005)
[»] scaffold0339 (2 HSPs)
scaffold0339 (1-93)||(3868-3960)
scaffold0339 (167-214)||(3747-3794)
[»] scaffold0140 (2 HSPs)
scaffold0140 (29-221)||(24184-24375)
scaffold0140 (29-111)||(22019-22100)
[»] scaffold0472 (1 HSPs)
scaffold0472 (16-215)||(5927-6125)
[»] scaffold0127 (1 HSPs)
scaffold0127 (29-215)||(12869-13054)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48486327 - 48486112
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||| |||| ||    
T  48486327 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgccagcgcaccattgtgccacattgtgacccca 48486228  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||    
T  48486227 tcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgctcagccatcgtgccacgatttctgcaggacctgatttt 48486128  T
Q  201 aagttcactctcacaa 216  Q
    ||||| ||||||||||    
T  48486127 aagttaactctcacaa 48486112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36919912 - 36920131
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||| ||||||||||||||||||||||||| ||||||| ||    
T  36919912 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctactattcgctgccagcgcaccatcgtgccacgatgcgacccca 36920011  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  36920012 tcgtgccacgatttttccagtgacttgcctcaaaattgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaacctgatttt 36920110  T
Q  201 aagttcactctcacaattctc 221  Q
    ||||| |||||||||||||||    
T  36920111 aagttaactctcacaattctc 36920131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 24878997 - 24878835
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||| | | ||    
T  24878997 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatacgtttctgttattcgatgccagcgtaccatcgtgccacgttgcaatccca 24878898  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgca 163  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  24878897 tcgtgccacgaaaaatccagtgacttgcgtcaaaactgaaacctccaatcgtgccacgttgca 24878835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 36921824 - 36922033
Alignment:
Q  5 gtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgt 104  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||  |||||||||||||||  ||||||| ||||||    
T  36921824 gtaaaagtatcgcttaaaatttggaacaaatctgcatccaaaaatacgtttctgttattcgctgccaatgcaccatcgtgccacaatgcgaccccatcgt 36921923  T
Q  105 gccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagt 204  Q
    |||||||    |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| |||| |||||||||||||||    
T  36921924 gccacgatttttccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtaccacgattt-tgcagaacctgattttaagt 36922022  T
Q  205 tcactctcaca 215  Q
    | |||||||||    
T  36922023 taactctcaca 36922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 24880459 - 24880299
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | ||    
T  24880459 tatagtaaaagtatcgcttaaaatttggaacaaatctgcatccaaaaatacgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaatccca 24880360  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttg 161  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  24880359 tcgtgccgcgaaaaatccagtgacttgcctcaaaactgaaacctccattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 31849926 - 31850138
Alignment:
Q  3 tagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatc 102  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||    
T  31849926 tagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatc 31850025  T
Q  103 gtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaa 202  Q
    |||||| ||    ||||||  |||||| |||||||||||||||||||||||||||||||| |||| |||||| ||| ||| ||||| | | |||||||||    
T  31850026 gtgccaagatttttccagtgccttgccccaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacaattcctgcagatcttgattttaa 31850125  T
Q  203 gttcactctcaca 215  Q
    ||| |||||||||    
T  31850126 gttaactctcaca 31850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 619772 - 619986
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||| ||||||||||||| |||| |  |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||    
T  619772 tatagtaaaagtatcgtttaaaatttggaaaaaatctctacccaaaaatatgtttctgttattcgccgccagcgcaccattgtgccacgttgcgacccca 619871  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||  |  | ||||||  || ||| || ||||||||||||||    
T  619872 tcgtgccacgaaaaatccaatgacttgcctcaaaactgaaacatccaattgtgccacgttgaccttcaatcgtgcgacaattcctacataacctgatttt 619971  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  619972 aagttaactctcaca 619986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3824898 - 3825115
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |  |||| ||||||||||||||||| ||||||| ||    
T  3824898 tatagtaaaagtattgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgtcgccaacgcaccatcgtgccacgatgcgacccca 3824997  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    | |||||| ||    ||||||   |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||  ||||||||||    
T  3824998 ttgtgccatgatttttccagtgctttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgtcacga-ttctgcagaaacctgattt 3825096  T
Q  200 taagttcactctcacaatt 218  Q
    |||||| ||||||||||||    
T  3825097 taagttaactctcacaatt 3825115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11006566 - 11006787
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| | ||||||||| || ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||    
T  11006566 tatagtaaaagtcttgcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgttttttgctgccagcgcaccatcgtgccacgatgcgacccca 11006665  T
Q  101 tcgtgccacgaaaaatccagtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcat--aacctgat 197  Q
    |||||||||||    ||||||  |||||||  |||| |||||||||| ||||||||||||||| |||| |||||| ||||| ||||||||  ||||||||    
T  11006666 tcgtgccacgatttttccagtgccttgcctaaaaaattgaaacctcc-atcgtgccacgttgcccagcgatcgtgccacga-ttctgcataaaacctgat 11006763  T
Q  198 tttaagttcactctcacaattctc 221  Q
    |||||||| |||||||||||||||    
T  11006764 tttaagttaactctcacaattctc 11006787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 22803059 - 22803239
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| || |||| ||||||| ||||||||||||||||||||||||| ||||||| ||    
T  22803059 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaa-tacgtttttgttattcgctgccagcgcaccatcgtgccacgatgcgacccca 22803157  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatt 182  Q
    ||| |||||||    ||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  22803158 tcgagccacgatttttccagtgcctttcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatt 22803239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38409207 - 38408992
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || || |||| ||||||||||||||||| ||||||| ||    
T  38409207 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgccgccaacgcaccatcgtgccacgatgcgacccca 38409108  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||   ||||||||||  |||||||||||||||||||||| ||| |||| |||||| ||||| |||||||  || || ||||    
T  38409107 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgatgcccagcaatcgtgccacga-ttctgcagaaatctaattt 38409009  T
Q  200 taagttcactctcacaa 216  Q
    |||||| ||||||||||    
T  38409008 taagttaactctcacaa 38408992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 5198428 - 5198217
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| || || | ||    
T  5198428 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatccca 5198329  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    |||||    ||||||||||  ||||| |||||||||||||||||||| |||| ||| || || |||| ||||| | | |||||||    
T  5198328 tcgtgccacgatttttccagagctttgcctcaaacttgaaatctccaatcgtgccacgttgcccagcaatcatgtcatgattcctgcagatcttgatttt 5198229  T
Q  201 aagttcactctc 212  Q
    ||||| ||||||    
T  5198228 aagttaactctc 5198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 24888804 - 24888594
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||||||||||||| ||||| | ||    
T  24888804 tatagtaaaagtattgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatccca 24888705  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||   ||||||||||  ||||||||||||||||||||||||||  |||||||||| ||| | |||||||  || |||||||    
T  24888704 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccac-aattctgcagaaatctgattt 24888606  T
Q  200 taagttcactct 211  Q
    |||||| |||||    
T  24888605 taagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 51015254 - 51015037
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  51015254 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactgaaaaatatgtttctgttattcgctgccagcgcaccatcgtgccacgatgcgacccca 51015155  T
Q  101 tcgtgccacgaaaaatccagtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgatt 198  Q
    ||||||||| |    ||||||  |||||||  ||||||||||||||| |||||||||||||||   |||||| || ||||| |||||||  || ||||||    
T  51015154 tcgtgccacaatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcatgccacga-ttctgcagaaatctgatt 51015057  T
Q  199 ttaagttcactctcacaatt 218  Q
    ||||||| ||||||| ||||    
T  51015056 ttaagttaactctcagaatt 51015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 5637794 - 5638006
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| || ||||||||| ||||||| ||||||| ||||| | ||    
T  5637794 tatagtaaaagtatcgcttaaaatttggaacaaatctgcaccc-aaaatacgtttctgtttttcgctgccagctcaccatcatgccacgatgcgatccca 5637892  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    ||||| || ||    ||||||  ||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||| ||| |||  ||||||||||    
T  5637893 tcgtgacatgatttttccagtgccttgcctcaaaactgaaacctcc-atcgtgccacgttgcccagcaatcgtgccacga-ttccgcagaaacctgattt 5637990  T
Q  200 taagttcactctcaca 215  Q
    |||||| |||||||||    
T  5637991 taagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22044715 - 22044936
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||  |||||||| ||||||||||||||| ||||| | ||    
T  22044715 tatagtaaaagtatcgcttaaaatttggaacaaatctgcact-aaaaatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatccca 22044813  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc---aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgat 197  Q
    |||||||||||    ||||||  ||||||||   |||| |||||||||| ||||||||||||||| |  | |||||| ||||||| ||||| | | ||||    
T  22044814 tcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacctcc-atcgtgccacgttgcccttcaatcgtgccacgattcctgcagatcttgat 22044912  T
Q  198 tttaagttcactctcacaattctc 221  Q
    |||||||| |||||||||||||||    
T  22044913 tttaagttaactctcacaattctc 22044936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 40091740 - 40091952
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||  |||||| |||| ||| ||||||||||| |||||||||||| ||    
T  40091740 tatagtaaaagtatcgcttaaaatttggaacaaatatgcactgaaaaatacgtttacgttattcgctgtcagtgcaccatcgtgtcacgttgcgacccca 40091839  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    || || |||||    |||| |  ||| | |||||||||||| |||||||||||||||||| | || ||| |||| |||||||  |||| |||||||||||    
T  40091840 tcatggcacgatttttccaatggcttacttcaaaactgaaatctccaatcgtgccacgttacccaaccaccgtgccacgattattgcagaacctgatttt 40091939  T
Q  201 aagttcactctca 213  Q
    ||||| |||||||    
T  40091940 aagttaactctca 40091952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 52942772 - 52943002
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgca---------------------cca 79  Q
    |||||| |||||||  ||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||                     |||    
T  52942772 tatagtgaaagtattacttaaaatttggaacaaatctgcaccaaaaaatatgtttatgttattcgctgccagcgcatcatcgtgccacgttgtgacccca 52942871  T
Q  80 tcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacg 179  Q
    ||||||||||||| |||| ||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||    
T  52942872 tcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctcaaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgccacg 52942971  T
Q  180 atttctgcataacctgattttaagttcactc 210  Q
    |||| |||| |||||||||||||||| ||||    
T  52942972 atttttgcaaaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9174471 - 9174690
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| | ||||||||  || ||||||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||| || |||| ||    
T  9174471 tatagtaaaagtcttgcttaaaaactgtaacaaatctgcacccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagacccca 9174570  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctca-aaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||| ||    ||||||  ||||||| | ||||| |||||||| ||||||| |||||||  |||| ||||| ||||| ||||||| ||||||||||    
T  9174571 tcgtgccatgatttttccagtgccttgcctaataaactaaaacctcc-atcgtgctacgttgcctagccgtcgtgccacga-ttctgcagaacctgattt 9174668  T
Q  200 taagttcactctcacaattctc 221  Q
    |||||| |||||||||||||||    
T  9174669 taagttaactctcacaattctc 9174690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 18847124 - 18846922
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||| ||  | || ||||||||||||||||||| ||||||| |||||| ||||||        
T  18847124 gctttaaatttgtaacaaatctgcacccaaaaatatgtttctgtttttccccgcgagcgcaccatcgtgccacgatgcgaccccatcgtaccacgatttt 18847025  T
Q  116 tccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgc---ataacctgattttaagttcactctc 212  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | | || | |||||| ||||| ||||||   | || ||||||||||||| ||||||    
T  18847024 tccagtaccttgcctcaaaactgaaacctccaatcgtgccacgattcccaacaatcgtgccacga-ttctgcagaaaaatctgattttaagttaactctc 18846926  T
Q  213 acaa 216  Q
    ||||    
T  18846925 acaa 18846922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37089699 - 37089809
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| | |||||||||||||||||||| |||||| ||||||| |||||||||||| || |||||||||||||||||||||| ||||||| ||    
T  37089699 tatagtaaaagttttgcttaaaatttggaacaaatctgcacctaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgacccca 37089798  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  37089799 tcgtgccacga 37089809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9148259 - 9148054
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||        ||||||||||||| ||| ||| ||    
T  9148259 tatagtaaaagtatcgcttaaaatttggaacaaatctgcaccc-aaaatacgtttctgttatttgctg--------ccatcgtgccacgatgcaacccca 9148169  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||   ||||||||||  ||||||||||||||| |||||||||| |||| |||||  ||||||| ||| | | | |||||||    
T  9148168 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgcgccacgttgcccagcaatcgtaccacgattcctgaagatcttgatttt 9148069  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  9148068 aagttaactctcaca 9148054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 9176836 - 9177035
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    |||| ||||||  ||||||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||| || |||| |||||||||||||        
T  9176836 gctttaaatttataacaaatctgcacccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 9176935  T
Q  116 tccagtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctca 213  Q
    ||||||  |||||||  |||||| |||||||| |||||||||||||||  | || ||||| ||||| |||||||  |||||||||||||||| |||||||    
T  9176936 tccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcctaaccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctca 9177033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11434963 - 11434875
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  11434963 tatagtaaaagtttcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacg 11434875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 47274735 - 47274643
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgc 93  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  47274735 tatagtaaaagtattgcttaaaatttgaaacaaatctgcacccaaaaatacgtttatgttattcgctgccatcgcaccatcgtgccacgttgc 47274643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 11008932 - 11009027
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||||| || ||||||| |||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||| |||||||||||||    
T  11008932 gcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgttttttgctgccagtgcaccatcgtgccacgatgcgaccccatcgtgccacga 11009027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 22047010 - 22047116
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||  |||||||| ||||||||||||||| ||||| | ||    
T  22047010 tatagtaaaagtatcgcttaaaatttggaacaaatctgca-ctaaaaatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatccca 22047108  T
Q  101 tcgtgcca 108  Q
    ||||||||    
T  22047109 tcgtgcca 22047116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7941327 - 7941240
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccac 88  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |   ||||||||||||||||||||    
T  7941327 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgtcaccagcgcaccatcgtgccac 7941240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 16932175 - 16932366
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||||||    ||||||  |||||    
T  16932175 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc 16932273  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaattctc 221  Q
    |  |||| || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||| || |||||||||||||| |||||||||||||||    
T  16932274 ccaaaaaactaaaacctcca-tcgtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaattctc 16932366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8756575 - 8756679
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||| ||| |||||||||||||| |||||| | |||||||||||||||||| ||  ||||||||||| | || |||||||||| ||||    
T  8756575 tatagtaaaagtatcgtttataatttggaacaaatctgcaccgagaaatatgtttctgttattcgcctccagcgcaccaacatggcacgttgcgatctca 8756674  T
Q  101 tcgtg 105  Q
    |||||    
T  8756675 tcgtg 8756679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22801187 - 22801274
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||||||||||||||||| ||||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||||||||    
T  22801187 tatagtaaaagtatcgcttaaaatttgaaacaaatctgcactc-aaaatacgtttctgttatttgctgccggcgcaccatcgtgccacg 22801274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 22780767 - 22780958
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||  || |||| |||||||||| ||    ||||||  |||||    
T  22780767 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacaatgagaccccatcgtgccatgatttttccagtgccttgc 22780865  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaattctc 221  Q
    |  |||| || ||||||||| |||||||||||||| |||| |||||  ||||||| ||||| || |||||||||||||| |||||||||||||||    
T  22780866 ccaaaaaactaaaacctcca-tcgtgccacgttgcccagctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcacaattctc 22780958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 7941215 - 7941133
Alignment:
Q  132 aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    |||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  7941215 aaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 22783132 - 22783317
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||| ||    ||||||  |||||    
T  22783132 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgc 22783230  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcaca 215  Q
    |  |||| || ||||||||| |||||||||||||| |||| |||||  ||||||| ||||| || |||||||||||||| |||||||||    
T  22783231 ccaaaaaactaaaacctcca-tcgtgccacgttgcccagctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcaca 22783317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 22801263 - 22801346
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatt 182  Q
    |||||||||||||    ||||||  |||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||    
T  22801263 catcgtgccacgatttttccagttccttgcctcaaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgatt 22801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 16934529 - 16934714
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | | |||||||||||||||||| | || |||| |||||||||||||    ||||||  |||||    
T  16934529 aacaaatctgctcccaaaaatacgttt-tatttttatccgacagcgcaccatcgtgccaggatgagaccccatcgtgccacgatttttccagtgccttgc 16934627  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcaca 215  Q
    |  |||| || ||||||||| |||||||| ||||| ||||| ||||| ||||||| ||||| || |||||||||||||| |||||||||    
T  16934628 ccaaaaaactaaaacctcca-tcgtgccatgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 16934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 11434861 - 11434769
Alignment:
Q  124 cttgcctcaaaa--ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||||||||||||  |||||||||||| |||||||||||||| ||||||||||  ||||| |||||||  |||||||||||||||| |||||||||    
T  11434861 cttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccagccatcgtaccacga-ttctgcagaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 22048493 - 22048581
Alignment:
Q  132 aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    |||||||||||||||| |||||||||||||| |  | |||||| |||||||  |||  | | |||||||||||| |||||||||||||||    
T  22048493 aaaactgaaacctcca-tcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcacaattctc 22048581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 16638595 - 16638543
Alignment:
Q  169 atcgtggcacgatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    ||||||||||||||| | || |||||||||||| ||| |||||||||||||||    
T  16638595 atcgtggcacgatttttccagaacctgattttatgttaactctcacaattctc 16638543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 47274569 - 47274522
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcac 214  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||||||||    
T  47274569 ccatcgtggcacgatttctacatatcctaattttaagttaactctcac 47274522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 16631114 - 16631068
Alignment:
Q  169 atcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    ||||||||||||||| | || |||||||||||||||| |||||||||    
T  16631114 atcgtggcacgatttttccagaacctgattttaagttaactctcaca 16631068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 32264366 - 32264580
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||    
T  32264366 tatagtaaaagtatcgcttaaaatttgaaacaaatctgcacccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaagccca 32264465  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||    
T  32264466 tcgtgccacgaaaaatccagtgacttgcctcaaaaactgaaacctccaatcgtgccacgtt-cccagccatcgtgccacgatttctgcaaaacctgattt 32264564  T
Q  200 taagttcactctcaca 215  Q
    |||||| |||||||||    
T  32264565 taagttaactctcaca 32264580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18099493 - 18099709
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| || || || |||||||||||||||||||||| ||||||| ||    
T  18099493 tatagtaaaagtctcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctattgttcgccgccagcgcaccatcgtgccacgatgcgacccca 18099592  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||  ||||||||||    
T  18099593 tcgtgccacgatttttccagtgtcttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaaacctgattt 18099691  T
Q  200 taagttcactctcacaat 217  Q
    |||||| |||||||||||    
T  18099692 taagttaactctcacaat 18099709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 26720482 - 26720267
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||| || ||||||||| ||||||||||||||| ||||| | ||    
T  26720482 tatagtaaaagtattgcttaaaatttggaacaaatctgcactaaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatccca 26720383  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||   ||||||||||  |||||||||||||| ||||||||||| ||||||||||| ||||||| ||||| | |||||||||    
T  26720382 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcctgccacgttgctcagccatcgtgccacgattcctgcagatcctgatttt 26720283  T
Q  201 aagttcactctcacaa 216  Q
    ||||| ||||||||||    
T  26720282 aagttaactctcacaa 26720267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1321375 - 1321161
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||||||||||||| ||||||| ||    
T  1321375 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgacccca 1321276  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    | ||||   ||||||||||  ||||||||| |||||||||||||||| |||| |||||| ||||||| ||||| | | |||||||    
T  1321275 tcgtgccacgattttttcagtgctttgcctcaaacttgaaacctctaatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgatttt 1321176  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  1321175 aagttaactctcaca 1321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5191587 - 5191374
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| || || | ||    
T  5191587 tatagtaaaagtttcccttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgagatccca 5191488  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||| |||||||  || |||||||    
T  5191487 tcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgatgcccagcaatcgtgccacga-ttctgcagaaatctgattt 5191389  T
Q  200 taagttcactctcac 214  Q
    |||||| ||||||||    
T  5191388 taagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5522938 - 5523154
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||| | ||    
T  5522938 tatagtaaaagtttcgcttaaaatttgaaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatccca 5523037  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    | |||||||||    ||||||| |||||||||||||||||||| |||||||||||| ||||| |||| ||| || ||||||| || || | | |||||||    
T  5523038 ttgtgccacgatttttccagtaccttgcctcaaaactgaaaccaccaatcgtgccatgttgcccagcaatcttgccacgattcctccagatcttgatttt 5523137  T
Q  201 aagttcactctcacaat 217  Q
    ||||| |||||||||||    
T  5523138 aagttaactctcacaat 5523154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10956350 - 10956566
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||  || |||||||||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||| ||    
T  10956350 tatagtaaaaaaattgcttaaaatttggaacaaatctgcacctaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgacccca 10956449  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||  |||||| |||||||||||||||||||||||||| | ||  ||||||| ||| ||||||| ||||| | |||||||||    
T  10956450 tcgtgccacgatttttccagtgccttgccccaaaactgaaacctccaatcgtgccatgatgtccagccat-gtgccacgattcctgcagatcctgatttt 10956548  T
Q  201 aagttcactctcacaatt 218  Q
    ||||| ||||||||||||    
T  10956549 aagttaactctcacaatt 10956566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 22114628 - 22114844
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||| ||||||||||||||||| ||||||| ||    
T  22114628 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccatcgcaccatcgtgccacgatgcgacccca 22114727  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgatt 198  Q
    ||||||||| |    ||||||  |||||||| ||||||||||||||| ||||||||||||||| || |||||||| ||||| |||| ||  |||||||||    
T  22114728 tcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcccaaccatcgtgccacga-ttctacagaaacctgatt 22114825  T
Q  199 ttaagttcactctcacaat 217  Q
    ||||||| |||||||||||    
T  22114826 ttaagttaactctcacaat 22114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 48361993 - 48362186
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| ||||||||||||||||                        
T  48361993 tatagtaaaagtatcgcttaaaatttggaacaaatctgcatccaaaaatacgtttctgctattcgctgccagcgcaccat-------------------- 48362072  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
     | |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||| || |||||||||||    
T  48362073 -catgccacgaaaaatctagttacttgcctcaaaactgaaacttccaatcgtgccacgttgcccaaccatcgtgccacgatttctacagaacctgatttt 48362171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10958646 - 10958756
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||  || |||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  10958646 tatagtaaaaaaattgcttaaaatttggaacaaatctgcacctaaaaatacgtttctgttattggctgccagcgcaccatcgtgccacgatgcgacccca 10958745  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  10958746 tcgtgccacga 10958756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24177213 - 24176999
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||| |||||||||| ||||||||||||||||||| |||||  ||||||| |||| |||| || ||  ||| |||||||||||||||| |||||| | ||    
T  24177213 tataataaaagtatcccttaaaatttggaacaaatctgcacttaaaaatacgtttatgtttttcgcctccaacgcaccatcgtgccacattgcgatccca 24177114  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||      |||||| |||||| ||| |||||||||  |||||||||||||||||| | || | |||| |||||||||| || ||| |||||||    
T  24177113 tcgtgccacattttttccagtgacttgcttcagaactgaaacaaccaatcgtgccacgttgccctgcaaacgtgccacgatttctccagaacttgatttt 24177014  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  24177013 aagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 32218952 - 32218834
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    |||||||||||| |||||||||  ||||||||||||  |||||||||||||||||||||||||| ||  ||||||| ||||||||||||| |||||||||    
T  32218952 catcgtgccacggaaaatccagcgacttgcctcaaagttgaaacctccaatcgtgccacgttgcccaatcatcgtgccacgatttctgcagaacctgatt 32218853  T
Q  199 ttaagttcactctcacaat 217  Q
    ||||||| |||||||||||    
T  32218852 ttaagttaactctcacaat 32218834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10191636 - 10191724
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  10191636 tatagtaaaagtatcgcttaaaatttggaacaaatttgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacg 10191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18162598 - 18162510
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  18162598 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgccagcgcaccatcgtggcacg 18162510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10084716 - 10084804
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  10084716 tatagtaaaagcatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacg 10084804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18097224 - 18097428
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||| || ||||                |  ||||||| ||    
T  18097224 tatagtaaaagtctcgcttaaaatttgaaacaaatctgcacccaaaaatacgtttctgttattcgccgcca----------------ctatgcgacccca 18097307  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    |||  |  ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||  ||||||||||    
T  18097308 tcgtgccacgatttttcctatgccttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaaacctgattt 18097406  T
Q  200 taagttcactctcacaattctc 221  Q
    |||||| |||||||||||||||    
T  18097407 taagttaactctcacaattctc 18097428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3859462 - 3859352
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||||| |||| | ||||| || |||||||||||||||||||||| || |||| ||    
T  3859462 tatagtaaaagtttcgcttaaaatttgaaacaaatctgcacccaaaaatacgtttatattattcgccgccagcgcaccatcgtgccacgatgtgacccca 3859363  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  3859362 tcgtgccacga 3859352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 45882873 - 45882763
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||||| |||||||||||| | || |||||||||||||||||||||||| | | ||    
T  45882873 tatagtaaaagtatcgcttaaaattttcaacaaatctgcacccaaaaataggtttctgttattcgttgtcagcgcaccatcgtgccacgttgcaatccca 45882774  T
Q  101 tcgtgccacga 111  Q
    ||||| |||||    
T  45882773 tcgtggcacga 45882763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11170338 - 11170250
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||| ||||||    
T  11170338 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatatgtttctgttattcgccgccagcgcacaatcgagccacg 11170250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 11163080 - 11162997
Alignment:
Q  5 gtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccac 88  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  11163080 gtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccac 11162997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 32219022 - 32218941
Alignment:
Q  8 aaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||  ||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  32219022 aaagtattacttaaaatttggaacaaatctgcacccaaaaatacgtttctcttattcgctgccagcgcaccatcgtgccacg 32218941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 6063808 - 6064012
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    ||||||||| || ||||||| ||||||||||||||||||| | || ||| | |||||  ||||||||||||||| ||||||| |||||||||||||        
T  6063808 gcttaaaatctgtaacaaatctgcacccaaaaatatgttt-tatttttatccgccagtccaccatcgtgccacgatgcgaccccatcgtgccacgatttt 6063906  T
Q  116 tccagtaacttg-cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcat-aacctgattttaagttcactctca 213  Q
    | ||||  |||| ||  |||||| |||||||| || ||||||||||||   ||||||||| ||||| |||||||| |||||||||||||||| | |||||    
T  6063907 ttcagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacga-ttctgcataaacctgattttaagttaattctca 6064004  T
Q  214 caattctc 221  Q
    ||||||||    
T  6064005 caattctc 6064012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 38889936 - 38889863
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  38889936 gcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacg 38889863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 53896556 - 53896754
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    ||||||||| || ||||||| ||| |||||||||| |||| | || ||| | || || |||||||||||||||| || |||| |||||||||||||        
T  53896556 gcttaaaatctgtaacaaatctgctcccaaaaatacgttt-tatttttatccgcaagagcaccatcgtgccacgatgagaccccatcgtgccacgatttt 53896654  T
Q  116 tccagtaacttg-cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctca 213  Q
    ||||||| |||| ||  |||||| |||||||| ||||||||||||||| |||| |||||| ||||| |||||||  |||||||||||||||| |||||||    
T  53896655 tccagtaccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagcaatcgtgccacga-ttctgcagaaacctgattttaagttaactctca 53896752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24979641 - 24979553
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||| |||||||  ||||||||||||||||||| |||||| |||||||||||| ||||||| ||| |||||| ||||||||||||||    
T  24979641 tatagtgaaagtattacttaaaatttggaacaaatctgcaccaaaaaatatgtttatgttattcgctaccagcgtaccatcgtgccacg 24979553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35777355 - 35777268
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||| | ||||||||| || ||||||| ||||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  35777355 tatagtaaaagtcttgcttaaaatctgtaacaaatctgcacccaaaaatatgtttatgtt-tttgctgccagcgcaccatcgtgccacg 35777268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 7606881 - 7606969
Alignment:
Q  132 aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaattctc 221  Q
    |||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| || |||||||||||||| |||||||||||||||    
T  7606881 aaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgtcacgatt-ctgcagaaacctgattttaagttaactctcacaattctc 7606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 5886182 - 5886039
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    ||||||||| || ||||||| |||||||||||||| |||| | || ||| |||||||||||||||||| ||||| ||||||| |||||||||||||        
T  5886182 gcttaaaatctgtaacaaatttgcacccaaaaatacgttt-tatttttatctgccagcgcaccatcgtaccacgatgcgaccccatcgtgccacgatttt 5886084  T
Q  116 tccagtaacttgcct-caaaactgaaacctccaatcgtgccacgtt 160  Q
    ||||||| |||||||  |||||| |||| ||| |||||||||||||    
T  5886083 tccagtaccttgcctaaaaaactaaaacatcc-atcgtgccacgtt 5886039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 6719471 - 6719544
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||| || | ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  6719471 gcttaaaatctgtatcaaatctgcacccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacg 6719544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 38210252 - 38210066
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||| ||||||||||| || |||| |||||||||||||    ||||||  |||||    
T  38210252 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcactatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc 38210154  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaa 216  Q
    |  |||| || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||| || |||||||||||||| ||||||||||    
T  38210153 ccaaaaaactaaaacctcca-tcgtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 38210066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 50493861 - 50493676
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||  |||||||||||||    ||||||  |||||    
T  50493861 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgagactccatcgtgccacgatttttccagtgccttgc 50493763  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    |  |||| || ||||||||| |||||||||||||| |||| |||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  50493762 ccaaaaaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 50493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 25388795 - 25388701
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||||| || ||||||| ||| ||||||||||||||| | || ||| |||||||||||||||||||||||| || |||| |||||||||||||    
T  25388795 gcttaaaatctgtaacaaatctgctcccaaaaatatgttt-tatttttatctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacga 25388701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 5899657 - 5899566
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgcca 108  Q
    ||||||||| || ||||||| || ||||||||||| |||| | || ||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  5899657 gcttaaaatctgtaacaaatctgtacccaaaaatacgttt-tatttttatctgccagcgcaccatcgtgccacgatgcgaccccatcgtgcca 5899566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 11162982 - 11162891
Alignment:
Q  124 cttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||||||||| |||||||||||| |||||||||||||| |||| |||||| ||||||| ||||| | | |||||||||||| |||||||||    
T  11162982 cttgcctcaaaaactgaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 11162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15780794 - 15780747
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaa 48  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15780794 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaa 15780747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 11170236 - 11170139
Alignment:
Q  124 cttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    |||||||||||| | |||||||||| |||||||||||||| |||| | |||| ||||||| ||||| | | |||||||||||| |||||||||||||||    
T  11170236 cttgcctcaaaaaccgaaacctcca-tcgtgccacgttgcccagcaaccgtgccacgattcctgcagatcttgattttaagttaactctcacaattctc 11170139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12268289 - 12268348
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgtt 60  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||| || ||||||    
T  12268289 tatagtaaaagtatcgcttaaaatttggaacaaatttgcactgaaaaatacgtctctgtt 12268348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 24979564 - 24979511
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgt 152  Q
    |||||||||||||||||| |||| ||||||| |||| |||||||||||||||||    
T  24979564 catcgtgccacgaaaaattcagtgacttgccacaaagctgaaacctccaatcgt 24979511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46966958 - 46967017
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgtt 60  Q
    ||||||||||||| | ||||||||||||||||||| ||||   |||||||||||||||||    
T  46966958 tatagtaaaagtaacccttaaaatttggaacaaatctgcattgaaaaatatgtttctgtt 46967017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 10192401 - 10192476
Alignment:
Q  86 cacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgc 162  Q
    |||| ||||| | |||||||||||||    ||||||  ||||||||||||||||||||||| |||||||||||||||    
T  10192401 cacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacctcc-atcgtgccacgttgc 10192476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 45882707 - 45882659
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  45882707 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 45882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 10085494 - 10085556
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgc 162  Q
    |||||||||||||    ||||||  ||||||||||||||||||||||| |||||||||||||||    
T  10085494 catcgtgccacgatttttccagtgccttgcctcaaaactgaaacctcc-atcgtgccacgttgc 10085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 18162451 - 18162405
Alignment:
Q  169 atcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    ||||||||||||||| |||| | |||||||||||||| |||||||||    
T  18162451 atcgtggcacgatttatgcagatcctgattttaagttaactctcaca 18162405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38889973 - 38889939
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  38889973 tatagtaaaagtttcgcttaaaatttggaacaaat 38889939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6066120 - 6066207
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||   ||||||||| || ||||||| ||| ||||||||||  ||| | || ||| | ||||||||||||||||||||||    
T  6066120 tatagtaaaagttctgcttaaaatctgtaacaaatctgctcccaaaaatacattt-tatttttatccgccagcgcaccatcgtgccacg 6066207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13893327 - 13893287
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcac 41  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  13893327 tatagtaaaagtaacccttaaaatttggaacaaatctgcac 13893287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21947981 - 21947768
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||   ||||||||||||||||||| | | ||    
T  21947981 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatatgtttctgttattcgctgcca---caccatcgtgccacgttgcaatccca 21947885  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||| ||| |||||| |||| |||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||| |||||||||||    
T  21947884 tcgtgccacgtaaagtccagtgacttacctcaaaactgaaacctccaatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaacctgatttt 21947785  T
Q  201 aagttcactctcacaat 217  Q
    ||||| |||||||||||    
T  21947784 aagttaactctcacaat 21947768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 20507787 - 20508001
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| | | ||    
T  20507787 tatagtaaaagtatcgcttaaatcttggaacaaatctgctcccaaaaatatgtttctgttattcgctgctagcgcaccttcgtgccatgttgcaatccca 20507886  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||| || | |||||| ||||||||||||| |||||||||||    
T  20507887 tcgtgccacgaaaaatccaatgacttgcctcaaaactaaaacctccaatcgtgctacgttgcccaactatcgtgccacgatttctgcagaacctgatttt 20507986  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  20507987 aagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 38882059 - 38881845
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||| ||    
T  38882059 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgacccca 38881960  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||||||    ||||||  |||||||| |||||| |||||||| ||||||||||||||| |||| |||||| ||||||| ||||| | | ||||||    
T  38881959 tcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctcc-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattt 38881861  T
Q  200 taagttcactctcaca 215  Q
    |||||| |||||||||    
T  38881860 taagttaactctcaca 38881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 16776111 - 16775897
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || | ||||||||||||||||||||||| ||||||| ||    
T  16776111 tatagtaaaagtatcgcttaaaatttggaacaaatcttcactcaaaaatatgtttctgtttttcgatgccagcgcaccatcgtgccacgatgcgacccca 16776012  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    | ||||   ||||||||||  ||||||||||||||||| ||||||||   ||||||||| ||||||| ||||| | |||||||||    
T  16776011 tcgtgccacgattttttcagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgccttgccatcgtgccacgattcctgcagatcctgatttt 16775912  T
Q  201 aagttcactctcaca 215  Q
    ||||| | |||||||    
T  16775911 aagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 20504316 - 20504458
Alignment:
Q  79 atcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcac 178  Q
    ||||||||||||||| | | ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |||| |||||| |||    
T  20504316 atcgtgccacgttgcaatcccatcgtgccacgaaaaatccattgacttgcctcaaaactaaaacctccaatcgtgccacgttgcccagctatcgtgccac 20504415  T
Q  179 gatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  20504416 gatttctgcagaacctgattttaagttaactctcacaattctc 20504458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4236583 - 4236374
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||| ||  |||||||||||||||||||||||| ||||| | ||    
T  4236583 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaa-tacgtttctgtttttccctgccagcgcaccatcgtgccacgatgcgatccca 4236485  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    | |||||||||    ||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||  || |||||||    
T  4236484 ttgtgccacgatttttccagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccac-aattctgcagaaatctgattt 4236386  T
Q  200 taagttcactct 211  Q
    |||||| |||||    
T  4236385 taagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 12556324 - 12556442
Alignment:
Q  98 tcatcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgat 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||  || ||||||||||||| ||||||||    
T  12556324 tcatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgcagaacctgat 12556423  T
Q  198 tttaagttcactctcacaa 216  Q
    ||||| || ||||||||||    
T  12556424 tttaaattaactctcacaa 12556442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 2818730 - 2818836
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||| ||||| |||    
T  2818730 catcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcagaacctaatt 2818829  T
Q  199 ttaagtt 205  Q
    |||||||    
T  2818830 ttaagtt 2818836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 34477438 - 34477638
Alignment:
Q  20 aaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatcca 119  Q
    ||||| || ||||||| ||||||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||    
T  34477438 aaaatctgtaacaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttcca 34477536  T
Q  120 gtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaat 217  Q
    ||  |||||||  |||||| |||||||| ||||||||||||||| ||||||||||| ||||| |||||||  ||| |||||||||||| |||||||||||    
T  34477537 gtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacttgattttaagttaactctcacaat 34477634  T
Q  218 tctc 221  Q
    ||||    
T  34477635 tctc 34477638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 659828 - 659707
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    |||||||||||||    |||||| |||||||||||| |||||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||    
T  659828 catcgtgccacgatttttccagtgacttgcctcaaa-ctgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgcagaacctgatt 659730  T
Q  199 ttaagttcactctcacaattctc 221  Q
    ||||||| |||||||||||||||    
T  659729 ttaagttaactctcacaattctc 659707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 21684786 - 21684896
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| | |||||||||||| ||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||    
T  21684786 tatagtaaaagttttgcttaaaatttgtaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgacccca 21684885  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  21684886 tcgtgccacga 21684896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25921798 - 25921886
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  25921798 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgtcagcgcaccatcgtgccacg 25921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 31544997 - 31544792
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    ||||||||| || || |||| |||||||||||||||||||||||| ||| | ||||||||||||||||| | || || |||| |||||||||||||        
T  31544997 gcttaaaatctgtaataaatctgcacccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttt 31544898  T
Q  116 tccagtaacttg-cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctca 213  Q
    ||||||  |||| ||  |||||| |||||||| ||||||||||||||| |||| |||||| |||||||| ||||  |||||||||||||||| |||||||    
T  31544897 tccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattt-tgcagaaacctgattttaagttaactctca 31544800  T
Q  214 caattctc 221  Q
    ||||||||    
T  31544799 caattctc 31544792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39798042 - 39797956
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgcca 87  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39798042 tatagtaaaagttttgcttaaaatttggaacaaatctgcacccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgcca 39797956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2174873 - 2174785
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||| ||||||||||||||||    
T  2174873 tatagtaaaagcatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagtgcaccatcgtgccacg 2174785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 31542628 - 31542442
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||| | || || |||| |||||||||||||    ||||||  ||||     
T  31542628 aacaaatctgcacccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgc 31542529  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| ||||||||||||||| |||| |||||| |||||||| ||||  |||||||||||||||| |||||||||    
T  31542528 ccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgtcacgattt-tgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 36402653 - 36402847
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| | ||||| ||||||||||||||                  
T  36402653 tatagtaaaagtatcgcttaaaatttg-aacaaatctgcacccaaaaatacgtttctgttattcgttgccaacgcaccatcgtgcc-------------- 36402737  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
           |||||||| ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||| |  || |||||||  ||||| ||||    
T  36402738 -------acgaaaaaaccagtgacttgcctcaaaactgaaacctccaatcgtgctatgttgcccagccatcgtgcctaga-ttctgcagaaacctaattt 36402829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 6756447 - 6756360
Alignment:
Q  2 atagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||||  |||||||||||||| |||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  6756447 atagtaaaagtataacttaaaatttggaataaatctgcaccaaaaaatacgtttctgttattcgctgccagcgcaccatcgtgccacg 6756360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 18186489 - 18186593
Alignment:
Q  117 ccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| |||||||  ||| |||||||||||| |||||||||    
T  18186489 ccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacga-ttctgcagaaacttgattttaagttaactctcaca 18186587  T
Q  216 attctc 221  Q
     |||||    
T  18186588 tttctc 18186593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 6756371 - 6756268
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||| |||   ||| ||||||| ||||||||||| | |||||||||    
T  6756371 catcgtgccacgaaaaatccagtgacttgcctcaaagttgaaacctctaatcgtgccatgttatccaggcatcgtgccacgatttctgtagaacctgatt 6756272  T
Q  199 ttaa 202  Q
    ||||    
T  6756271 ttaa 6756268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 31466397 - 31466502
Alignment:
Q  116 tccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||| |||||||||| ||||||||| ||  ||||||||||||||| |  | |||||| ||||||| ||||| |||||||||||||||| |||||||||    
T  31466397 tccagtgacttgcctcataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgcaaaacctgattttaagttaactctcaca 31466496  T
Q  216 attctc 221  Q
    ||||||    
T  31466497 attctc 31466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12556248 - 12556336
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||||||||||||| |||| ||||||| || || ||||||||  ||||||||||| |||||||||||| ||||||||||||    
T  12556248 tatagtaaaagtatcgcttaaattttgaaacaaatctgtacacaaaaatacatttctgttattcgctgccagcgcatcatcgtgccacg 12556336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2818661 - 2818731
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgcca 71  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||| |||||||    
T  2818661 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccgaaaatacgtttttgttattcgctgcca 2818731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31466303 - 31466389
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgcca 87  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||  ||| || ||||  ||||||| ||||||||||||||    
T  31466303 tatagtaaaagtgtcgcttaaaatttggaacaaatctgcacccaaaaatacatttatggtattccctgccagtgcaccatcgtgcca 31466389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 10757145 - 10756954
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  10757145 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 10757047  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| |||||  |||| || ||||  |||||||||||||||| |||||||||||||||    
T  10757046 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgctacga-ttgtgcagaaacctgattttaagttaactctcacaattctc 10756954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 15354880 - 15355071
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  15354880 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 15354978  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||| ||  || ||||  ||||| ||||| || ||||  |||||||||||||||| |||||||||||||||    
T  15354979 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacaattctc 15355071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 659850 - 659929
Alignment:
Q  80 tcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgtt 160  Q
    |||||||||  |||||||||||||||||||||    |||||| |||||||||||| |||||||||||||||||||||||||    
T  659850 tcgtgccacaatgcgacctcatcgtgccacgatttttccagtgacttgcctcaaa-ctgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 10749690 - 10749505
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  10749690 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 10749592  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| || ||||  |||||||||||||||| |||||||||    
T  10749591 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 15357156 - 15357237
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  15357156 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 15357237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 34479890 - 34479973
Alignment:
Q  132 aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaa 216  Q
    |||||| ||||||||| |||||||||||||| ||||||||||| ||||| |||||||  |||||||||||||||| ||||||||||    
T  34479890 aaaactaaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaa 34479973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 23665019 - 23664938
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||| | |||||||||||||    
T  23665019 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacga 23664938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 23667294 - 23667213
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||| | |||||||||||||    
T  23667294 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacga 23667213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 23793568 - 23793649
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||| | |||||||||||||    
T  23793568 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacga 23793649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 39797940 - 39797849
Alignment:
Q  124 cttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    |||||||||||| |||||||||||| || ||||||||||| ||||||||||| ||||| || ||||  |||||||||||||||| |||||||||    
T  39797940 cttgcctcaaaaactgaaacctcca-tcatgccacgttgcccagccatcgtgccacga-ttatgcagaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 25921892 - 25921992
Alignment:
Q  116 tccagtaacttgcctcaaaa--ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctc 212  Q
    ||||||  ||||||||||||  |||||||||||| |||||||||||||  || |||||||| ||||||| ||||| || |||||||||||||| ||||||    
T  25921892 tccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgtccaaccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctc 25921989  T
Q  213 aca 215  Q
    |||    
T  25921990 aca 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 21684905 - 21684970
Alignment:
Q  151 gtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaa 216  Q
    |||||||||||| ||||||||||| ||||| |||||||  |||||||||||||||| ||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaa 21684970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 31179769 - 31179850
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||||||    
T  31179769 aacaaatctgctcccaaaaatacgttt-tatttttacccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacga 31179850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 2174771 - 2174680
Alignment:
Q  124 cttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcaca 215  Q
    ||||||| |||| |||||||||||| ||||||||||||||   ||||||||| ||||||| ||||| || |||||||||||||| |||||||||    
T  2174771 cttgcctaaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 34479799 - 34479867
Alignment:
Q  20 aaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||| || ||||||| ||||||||||||||||||| | || ||| | ||||||||||||||||||||||    
T  34479799 aaaatctgtaacaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacg 34479867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 661247 - 661286
Alignment:
Q  176 cacgatttctgcataacctgattttaagttcactctcaca 215  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  661247 cacgatttctgcagaacctgattttaagttaactctcaca 661286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13215035 - 13214834
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||||| | | ||    
T  13215035 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttttgttatttgctgccaacacaccatcgtgccacgttgcaatccca 13214936  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||    
T  13214935 tcatgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccaaccatcgtgccacgatttttgcataacctgatttt 13214836  T
Q  201 aa 202  Q
    ||    
T  13214835 aa 13214834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15823500 - 15823286
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||    
T  15823500 tatagtaaaagtatcgcttaaaatttggaacaaatctgcatccaaaaatatgtttctgttatttgctgctagcgcaccatcgtgccacgatgcgacccca 15823401  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    || |||   ||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||    
T  15823400 tcgtgccacgatttttctagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgcagatcctgatttt 15823301  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  15823300 aagttaactctcaca 15823286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39462473 - 39462258
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaa-tatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctc 99  Q
    |||||| |||||||  ||||||||||||||||||| |||||||||||| || ||||||||||||  |||| |||||||||||||||||| |||| | | |    
T  39462473 tatagtgaaagtattacttaaaatttggaacaaatctgcacccaaaaaatacgtttctgttattcactgcaagcgcaccatcgtgccacattgcaatccc 39462374  T
Q  100 atcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| || |||| ||| ||||||||||||| ||||||||||    
T  39462373 atcgtgccacgaaaaatccactgacttgcctcaaaactgaaacctctaatcgtgccacgttgcccaaccattgtgtcacgatttctgcagaacctgattt 39462274  T
Q  200 taagttcactctcaca 215  Q
    |||||| |||||||||    
T  39462273 taagttaactctcaca 39462258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 28840632 - 28840418
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||||||||||||| ||||| | ||    
T  28840632 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatccca 28840533  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||| |    ||||||| ||||||| |||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||| | |||||||||    
T  28840532 tcgtgccacaatttttccagtaccttgcctaaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgatttt 28840433  T
Q  201 aagttcactctcaca 215  Q
    ||||| ||| |||||    
T  28840432 aagttaactttcaca 28840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 41646874 - 41646717
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| | | ||    
T  41646874 tatagtaaaagtatcgcttaaaatttggaacaaatctgcatccaaaaatatgtttctgttattcgctgccagtgcaccatcgtgccacgttgcaatccca 41646775  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacg 158  Q
     |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  41646774 ccgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctctaatcgtgccacg 41646717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28842447 - 28842227
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||  ||||||||||||||| ||||| | ||    
T  28842447 tatagtaaaagtatcgcttaaaatttggaacaaatttgcactcaaaaatatgtttctgtttttcgctgccaggacaccatcgtgccacgatgcgatccca 28842348  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||| ||||||| |||||||||||||||||||||||||||| ||   ||||||||| ||||||| || || | |||||||||    
T  28842347 tcgtgccacgatttttccagtaccttgcctaaaaactgaaacctccaatcgtgccacgtagccttgccatcgtgccacgattcctacagatcctgatttt 28842248  T
Q  201 aagttcactctcacaattctc 221  Q
    ||||| ||| |||||||||||    
T  28842247 aagttaactttcacaattctc 28842227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10400155 - 10400370
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||| ||    
T  10400155 tatagaaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgacccca 10400254  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    ||||||||||| |  ||||||   ||||||||||  |||||||||||||||||||||||||| |||| |||||| ||||| ||| |||  ||||||||||    
T  10400255 tcgtgccacgatatttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagcaatcgtgccacga-ttccgcagaaacctgattt 10400353  T
Q  200 taagttcactctcacaa 216  Q
    |||||| ||||||||||    
T  10400354 taagttaactctcacaa 10400370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51752319 - 51752098
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| || |||||||||||||||||||||| |||| || ||    
T  51752319 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcggcccca 51752220  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc--aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgat 197  Q
    |||||||||||    ||||||  ||||||||  ||||||||||||||| ||||||||||||||| || |||||||| ||||| |||||||  ||||||||    
T  51752219 tcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccaaccatcgtgccacga-ttctgcagaaacctgat 51752122  T
Q  198 tttaagttcactctcacaattctc 221  Q
    |||||||| |||||||||||||||    
T  51752121 tttaagttaactctcacaattctc 51752098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13761791 - 13761575
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||| |||||||||||| || ||||||| ||    
T  13761791 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcacaccatcgtgccgcgatgcgacccca 13761692  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgatt 198  Q
    |||||||||||    ||||||  |||||||| ||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||||||  |||||||||    
T  13761691 tcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcatgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgatt 13761594  T
Q  199 ttaagttcactctcacaat 217  Q
    ||||||| |||||||||||    
T  13761593 ttaagttaactctcacaat 13761575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 28207393 - 28207550
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||| || ||||||||||||||||||||||||| |||| ||    
T  28207393 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaaaacgtttatgttattcgccgccagcgcaccatcgtgccacgttgtgacccca 28207492  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacg 158  Q
    |||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||    
T  28207493 tcgtgccatgaaaaatccaatgacttgcctcaaagttgaaacctccaatcgtgccacg 28207550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 49687494 - 49687301
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| |||||||||||                        
T  49687494 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgctgtcagcgcaccat-------------------- 49687415  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||||||||    
T  49687414 -cgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacataacctgatttt 49687316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 51749993 - 51749778
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| ||||||||||| ||||||| ||    
T  51749993 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcactatcgtgccacgatgcgacccca 51749894  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc--aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgat 197  Q
    |||||||||||    ||||||  ||||||||  ||||||||||||||| ||||| ||||||||| || |||||||| ||||| |||||||  ||| ||||    
T  51749893 tcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtaccacgttgcccaaccatcgtgccacga-ttctgcagaaacttgat 51749796  T
Q  198 tttaagttcactctcaca 215  Q
    |||||||| |||||||||    
T  51749795 tttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20302413 - 20302192
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| ||    
T  20302413 tataataaaagtttcacttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgacccca 20302314  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc--aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgat 197  Q
    ||||||||| |    ||||||  ||||||||  ||||||||||||||| |||||||||||||||   |||||| || | ||| |||||||  || |||||    
T  20302313 tcgtgccacaatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcatgccgcga-ttctgcagaaatctgat 20302216  T
Q  198 tttaagttcactctcacaattctc 221  Q
    |||||||| |||||||||||||||    
T  20302215 tttaagttaactctcacaattctc 20302192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 3579948 - 3580161
Alignment:
Q  4 agtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcg 103  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||| |||| || |||| || |||||||||||||||||||||||||| | | || ||    
T  3579948 agtaaaagtatcgcttaaaatttggaacaaatttgcactctaaaatacgtttatgatattcgccgccagcgcaccatcgtgccacgttgcaatcccaccg 3580047  T
Q  104 tgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaag 203  Q
    | ||||||    |||| | |||||||||| ||||||||| |||||| ||| |||||||| | || |||||| ||||||| ||||||||||||||||||||    
T  3580048 taccacgatttttccaatgacttgcctcataactgaaacatccaattgtgtcacgttgccctgcaatcgtgccacgattcctgcataacctgattttaag 3580147  T
Q  204 ttcactctcacaat 217  Q
    || |||| ||||||    
T  3580148 ttaactcccacaat 3580161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 6823837 - 6823664
Alignment:
Q  2 atagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcat 101  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| || |||||||||||||||||||||| ||||||| |||    
T  6823837 atagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcgaccccat 6823738  T
Q  102 cgtgccacgaaaaatccagtaacttgcctc--aaaactgaaacctccaatcgtgccacgttgcacagccatcgtg 174  Q
    | ||||||||    ||||||  ||||||||  ||||||||||||||| ||||||||||||||| || ||||||||    
T  6823737 catgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccaaccatcgtg 6823664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 47451602 - 47451405
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||| |||| |||||||||||||||||||| ||||| ||||    
T  47451602 tatagtaaaagtatcgcttaatatttggaacaaatctgcaccaaaaaatacgtttctgttattcgctgtcagcgcaccatcgtgccacgatgcgatctca 47451503  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    | ||          ||      | ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| || |||||||     
T  47451502 t-gt----------at------atttgcctcaaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgcaaaatctgatttg 47451420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30790721 - 30790936
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||| |||| |||| ||  |  |||||||||||||||||||| |||||| | ||    
T  30790721 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactgaaaaatacgtttatgtttttcccctccagcgcaccatcgtgccacattgcgatccca 30790820  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||||     |||||| |||||| ||| ||||||||| |||||||||||||| |||| | || | |||| |||||||||| || |||||| ||||    
T  30790821 tcgtgccacgttttttccagtgacttgcttcataactgaaacatccaatcgtgccacattgctctgcaaacgtgtcacgatttctccagaacctggtttt 30790920  T
Q  201 aagttcactctcacaa 216  Q
    |||||  |||||||||    
T  30790921 aagttagctctcacaa 30790936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 38925882 - 38925996
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||  |||||||||    
T  38925882 catcgtgccacaaaaaatccagtaacttgtctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgcggaacctgatt 38925981  T
Q  199 ttaagttcactctca 213  Q
    ||||||| |||||||    
T  38925982 ttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 47177274 - 47177076
Alignment:
Q  17 cttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaat 116  Q
    |||||||| || ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||||||    |    
T  47177274 cttaaaatctgtaacaaatctgctcccaaaaataggttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgattttt 47177176  T
Q  117 ccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    |||||  ||||||  |||||| |||||||| ||||||||||||||| ||| | ||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  47177175 ccagtgtcttgcccaaaaactaaaacctcc-atcgtgccacgttgcccagtcgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 6822968 - 6822881
Alignment:
Q  2 atagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||| ||||| || ||||||||||||||||||||||    
T  6822968 atagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacatttctattattcgccgccagcgcaccatcgtgccacg 6822881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 47179625 - 47179422
Alignment:
Q  17 cttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaat 116  Q
    |||||||| || ||||||| ||| |||||||||| |||| | || ||| | || ||||||||||||||||||| || |||| |||||||||||||    |    
T  47179625 cttaaaatctgtaacaaatctgctcccaaaaatacgttt-tatttttatccgcaagcgcaccatcgtgccacgatgagaccccatcgtgccacgattttt 47179527  T
Q  117 ccagtaacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcac 214  Q
     ||||  ||||||  |||| || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||| || |||||||||||||| ||||||||    
T  47179526 tcagtgccttgcccaaaaaactaaaacctcca-tcgtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 47179429  T
Q  215 aattctc 221  Q
    |||||||    
T  47179428 aattctc 47179422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 16226083 - 16225886
Alignment:
Q  17 cttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaat 116  Q
    |||||||| || ||||||| ||||||||||| ||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    |    
T  16226083 cttaaaatctgtaacaaatctgcacccaaaa-tatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgattttt 16225986  T
Q  117 ccagtaacttg-cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcac 214  Q
    |||||  |||| ||  |||||| |||||||| ||||||||||||||| || || ||||| ||||| |||||||  |||||||||||||||| ||||| ||    
T  16225985 ccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccaaccgtcgtgccacga-ttctgcagaaacctgattttaagttaactcttac 16225888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38925805 - 38925892
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccac 88  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||   ||||||| || ||||||| ||| ||||||||||||    
T  38925805 tatagtaaaagtatcgcttaaaatttggaataaatctgcacccaaaaatacacttctgttgttcgctgccaacgccccatcgtgccac 38925892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 14098443 - 14098516
Alignment:
Q  148 atcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||    
T  14098443 atcgtgccacggtgctcagccatcgtgccacgatttctgcagaatctgattttaagttaactctcacaattctc 14098516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14098297 - 14098380
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgc 85  Q
    |||||| |||||||  ||||||||||||||||| | |||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  14098297 tatagtgaaagtattacttaaaatttggaacaa-tctgcacccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgc 14098380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 14098373 - 14098453
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacg 179  Q
    |||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||| || |||||||| ||||    
T  14098373 catcgtgcaacgaaaaatccagtgacttgcgtcaaagctgaaacctccaatcgtgccacggtgctcaaccatcgtgccacg 14098453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 6822867 - 6822774
Alignment:
Q  124 cttgcctcaaaa--ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaa 216  Q
    ||||||||||||  |||||||||||| |||||||||||||| ||||||||||| ||||| |||||||  |||||||||||||||| ||||||||||    
T  6822867 cttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaa 6822774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 23783444 - 23783363
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  23783444 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 23783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 16231518 - 16231446
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||| || ||||||| ||||||||||||||||||| | || ||| | ||||||||||||||||||||||    
T  16231518 gcttaaaatctgtaacaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacg 16231446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 13461344 - 13461392
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||||||||||||| ||||| | |||||||||||||| |||||||||    
T  13461344 ccatcgtggcacgattcctgcagatcctgattttaagttaactctcaca 13461392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46783006 - 46782966
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcac 41  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  46783006 tatagtaaaagtaacccttaaaatttggaacaaatatgcac 46782966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 20291362 - 20291280
Alignment:
Q  132 aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataac-ctgattttaagttcactctcaca 215  Q
    ||||||||||||||||  |||||||||||||   ||||||||| ||||||| ||||| ||  ||||||||||||| |||||||||    
T  20291362 aaaactgaaacctccac-cgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaatctgattttaagttaactctcaca 20291280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6259140 - 6259360
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||| | ||    
T  6259140 tatagtaaaagtatcgcttaaaatttggaacaagtctgcacccaaaaatatgtttctgttattcaccgccagcgcaccatcgtgtcacgttgcgatccca 6259239  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    |||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  6259240 tcgtgccacgatttttccagtgactttcctcaaaactgaaacatccaatagtgccacgttgcacagccatcgtgccacgatttctgcagaacctgatttt 6259339  T
Q  201 aagttcactctcacaattctc 221  Q
    ||||| ||||||  |||||||    
T  6259340 aagttaactctcttaattctc 6259360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 21521020 - 21521237
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| | ||    
T  21521020 tatagtaaaagtatcgcttaaattttggaacaaatctgcacccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgttgcgatccca 21521119  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||| |||||    ||||||  ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| | |||||||||||    
T  21521120 tcgtggcacgatttttccagtggcttgcttcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgtagaacctgatttt 21521219  T
Q  201 aagttcactctcacaatt 218  Q
    ||||| ||||||||||||    
T  21521220 aagttaactctcacaatt 21521237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 40032383 - 40032587
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||           | | ||    
T  40032383 tatagtaaaagtatcgcttaaaacttggaacaaatctgcacccaaaaatacgtttctgttattcgctgccagcgcaccatcgt-----------atccca 40032471  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  40032472 tcgtgccacgaaaaatccagtgacttgtctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatttctgcagaacctgatttt 40032571  T
Q  201 aagttcactctcacaa 216  Q
    ||||| ||||||||||    
T  40032572 aagttaactctcacaa 40032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 42064445 - 42064231
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| || ||||||||||||||||||||||||| || || | ||    
T  42064445 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactaaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatccca 42064346  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||   ||||||||||  ||||||||||| |||| ||||||||| |||| |||||| ||||||| ||||| | | |||||||    
T  42064345 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccagtcgtaccacgttgcccagcaatcgtgccacgattcctgcagatcttgatttt 42064246  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  42064245 aagttaactctcaca 42064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 22407734 - 22407948
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| || | ||    
T  22407734 tatagtaaaagtattgcttaaaattttgaacaaatctgcacccaaaaatacgtttctgttattcgctgccaacgcaccatcgtgccacgttgtgatccca 22407833  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||||||| |    | || | |||||||||||||||||||| ||||||||||||| ||| | |  | |||||| ||||||| ||||| ||||| |||||    
T  22407834 tcgtgccacaattttttcactgacttgcctcaaaactgaaacatccaatcgtgccatgttacccttcaatcgtgccacgattcctgcagaacctaatttt 22407933  T
Q  201 aagttcactctcaca 215  Q
    || || |||||||||    
T  22407934 aaattaactctcaca 22407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19502336 - 19502556
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||| | || ||||||||||||| ||||| |||| |||||||||||||||||||||| |  |||||||||||||||||||||| ||||||| ||    
T  19502336 tatagtaaaattttcccttaaaatttggatcaaatctgcaaccaaaaatatgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgacccca 19502435  T
Q  101 tcgtgccacgaaaaatccagtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgatt 198  Q
    |||||||||||    ||||||  |||||||  ||||||||||||||| |||||||||||||||   ||||||||| ||||| |||||||  |||||||||    
T  19502436 tcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgatt 19502533  T
Q  199 ttaagttcactctcacaattctc 221  Q
    ||||||| ||| |||||||||||    
T  19502534 ttaagttaactatcacaattctc 19502556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 24162537 - 24162753
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||  |||| || |||||||||| ||||||||||| ||||||| ||    
T  24162537 tatagtaaaagtttcgcttaaaatttgaaacaaatctgcacccaaaaatacgtttctaatattcgcagccagcgcacaatcgtgccacgatgcgacccca 24162636  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc--aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgat 197  Q
    |||||||||||    ||||||  ||||||||  ||||||||||||||| ||||||||||||||| || |||| ||| ||||| |||||||  ||| ||||    
T  24162637 tcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccaaccattgtgccacga-ttctgcagaaacttgat 24162734  T
Q  198 tttaagttcactctcacaa 216  Q
    |||||||| ||||||||||    
T  24162735 tttaagttaactctcacaa 24162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27104729 - 27104514
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |||| ||  |||||||||||||||||||||||| ||||| | ||    
T  27104729 tatagtaaaagtttcgcttaaaatttggaacaaatctgcactcaaaaatatgtttatgtttttccctgccagcgcaccatcgtgccacgatgcgatccca 27104630  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgatt 198  Q
    |||||||||||    ||||||  |||||||| ||||||||||||||| ||||||||||||||| |  | |||||| ||||| |||||||  || ||||||    
T  27104629 tcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcccttcaatcgtgccacga-ttctgcagaaatctgatt 27104532  T
Q  199 ttaagttcactctcacaa 216  Q
    ||||||| ||||| ||||    
T  27104531 ttaagttaactcttacaa 27104514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13910369 - 13910479
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||  ||||||| ||    
T  13910369 tatagtaaaagtttcccttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacaatgcgacccca 13910468  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  13910469 tcgtgccacga 13910479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 19504670 - 19504884
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| || ||||||||||||||||||| |||||| |||||| ||||||||||||| |  |||||||||||||||||||||| ||||||| ||    
T  19504670 tatagtaaaagtttcccttaaaatttggaacaaatctgcacctaaaaatgtgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgacccca 19504769  T
Q  101 tcgtgccacgaaaaatccagtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgc-ataacctgatt 198  Q
    |||||||||||    ||||||  |||||||  |||| | |||||||| |||||||||||||||   ||||||||| || || ||||||   |||||||||    
T  19504770 tcgtgccacgatttttccagtgccttgcctaaaaaattaaaacctcc-atcgtgccacgttgccttgccatcgtgccatga-ttctgctgaaacctgatt 19504867  T
Q  199 ttaagttcactctcaca 215  Q
    ||||||| ||| |||||    
T  19504868 ttaagttaactttcaca 19504884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 22287661 - 22287764
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||| |||||||||||||||| |||||||||| ||| | ||    
T  22287661 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaacatacatttttgttattcgctgccagcgcaccatggtgccacgttacgatccca 22287760  T
Q  101 tcgt 104  Q
    ||||    
T  22287761 tcgt 22287764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6264470 - 6264558
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |  ||||||||||||||||    
T  6264470 tatagtaaaaatatcgcttaaaatttggaacaaatctgcacccaaaaatatgtttctgttattcgccgctaatgcaccatcgtgccacg 6264558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 43623893 - 43623980
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||| |||| ||||||| |||||||||||||||||||||||||    
T  43623893 tatagtaaaagtattgcttaaaatttggaacaaatctgcaccc-aaaatacgtttatgttatttgctgccagcgcaccatcgtgccacg 43623980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 6264547 - 6264658
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    |||||||||||||    |||||| |||||||||||||||||||| ||||||| ||||||||||| || ||||||||  || ||||||||| |||||||||    
T  6264547 catcgtgccacgatttttccagtgacttgcctcaaaactgaaacatccaatcatgccacgttgcccaaccatcgtgcaacaatttctgcagaacctgatt 6264646  T
Q  199 ttaagttcactc 210  Q
    ||||||| ||||    
T  6264647 ttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 36559173 - 36559364
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  36559173 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 36559271  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| || ||||  |||||||||||||||| |||||||||||||||    
T  36559272 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacaattctc 36559364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 43623994 - 43624087
Alignment:
Q  124 cttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaat 217  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||  |||||||||||||||| ||| |||||||    
T  43623994 cttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatga-ttctgcagaaacctgattttaagttaactttcacaat 43624087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18800627 - 18800713
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccac 88  Q
    |||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||| || ||  | ||||||||||||||||||    
T  18800627 tatagtaaaagtatcgtttaaaatttggaacaaatctgcacttaaaaatatgtttctgtt-ttcgcctctagcgcaccatcgtgccac 18800713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 18800720 - 18800821
Alignment:
Q  116 tccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||| |||||| ||| ||||||||| |||||||||| |||||||| || | | |||| |||||||||| || ||| |||||||||||| |||||||||    
T  18800720 tccagtgacttgcttcataactgaaacatccaatcgtgtcacgttgcccaacaaacgtgccacgatttctccagaacatgattttaagttaactctcaca 18800819  T
Q  216 at 217  Q
    ||    
T  18800820 at 18800821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 36561450 - 36561531
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  36561450 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 36561531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 45332490 - 45332675
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||| ||||||    ||||||  ||||     
T  45332490 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgtgaccccatcgttccacgatttttccagttccttgc 45332588  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  45332589 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35107230 - 35107121
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||| ||||||||||||||||||| ||||   ||||||| | || ||||||| ||   ||||||||||  ||| |||||| ||| | ||    
T  35107230 tatagtaaaagtatcccttaaaatttggaacaaatctgcattgaaaaatacgattatgttattcgccttcagcgcaccaatgtgacacgttacgatccca 35107131  T
Q  101 tcgtgccacg 110  Q
    ||||| ||||    
T  35107130 tcgtgacacg 35107121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28462611 - 28462651
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcac 41  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  28462611 tatagtaaaagtaacccttaaaatttggaacaaatctgcac 28462651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 28462798 - 28462850
Alignment:
Q  169 atcgtggcacgatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    |||| |||||||||||| || |||||||||||||||| ||| ||| |||||||    
T  28462798 atcgaggcacgatttctccagaacctgattttaagttaactttcataattctc 28462850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15072720 - 15072500
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| | ||    
T  15072720 tatagtaaaagtatcgcttaaaatttggaacaaatttgcacccaaaaatacgtttctgttattcgctgccagcgcaccatcatgccacgttgcgatccca 15072621  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||| |||||    || |||  ||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| || ||||||||    
T  15072620 tcgtgacacgatttttctagtggcttgcttcaaaactgaaacctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatctgatttt 15072521  T
Q  201 aagttcactctcacaattctc 221  Q
    ||||| |||||||||||||||    
T  15072520 aagttaactctcacaattctc 15072500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12517351 - 12517565
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||||||||||||| ||||| | ||    
T  12517351 tatagtaaaagtatcgcttaaaatttggaacaaatttgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatccca 12517450  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    |||||||  ||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||| | |||||||||    
T  12517451 tcgtgccacgatttttccagtacattgcctcaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgatttt 12517550  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  12517551 aagttaactctcaca 12517565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 15067991 - 15067776
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| | ||    
T  15067991 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttttgttattcgctgccagcgcaccatcgtgccacgttgcgatccca 15067892  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    ||||| || ||    ||||||  ||||| ||||||||||||||||||||||||||| ||||| |||||||| || ||||||| ||||| || ||||||||    
T  15067891 tcgtggcatgatttttccagtggcttgcttcaaaactgaaacctccaatcgtgccatgttgcccagccatcttgccacgattcctgcaaaatctgatttt 15067792  T
Q  201 aagttcactctcacaa 216  Q
    ||||| || |||||||    
T  15067791 aagttaacactcacaa 15067776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27829307 - 27829087
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||||| ||||| | ||    
T  27829307 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatccca 27829208  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||||||    ||||||   ||||||| |||| |||||||||| ||||||||||||||| |||| |||||| ||||||| ||||| | ||||||||    
T  27829207 tcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctcc-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattt 27829109  T
Q  200 taagttcactctcacaattctc 221  Q
    |||||| |||||||||||||||    
T  27829108 taagttaactctcacaattctc 27829087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27826996 - 27826781
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||||| ||||| | ||    
T  27826996 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatccca 27826897  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||||||    ||||||   |||| || |||| |||||||||| ||||||||||||||| |||| |||||| ||||||| ||||| | ||||||||    
T  27826896 tcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctcc-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattt 27826798  T
Q  200 taagttcactctcacaa 216  Q
    |||||| ||||||||||    
T  27826797 taagttaactctcacaa 27826781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 44720816 - 44720614
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    ||||||||| || ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||||        
T  44720816 gcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgttttt-gctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 44720718  T
Q  116 tccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgc--ataacctgattttaagttcactctca 213  Q
    ||||||| ||||||||||||||||||||||||| ||||||||  ||| |||| ||| || ||||| ||||||  | |||||||||||||||| |||||||    
T  44720717 tccagtaccttgcctcaaaactgaaacctccaaacgtgccacaatgcccagcaatcatgccacga-ttctgcagaaaacctgattttaagttaactctca 44720619  T
Q  214 caatt 218  Q
    |||||    
T  44720618 caatt 44720614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 14807761 - 14807552
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| || |||| |||| || ||||||||||||||| ||||||||| ||||||| ||    
T  14807761 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaa-tacgtttatgtttttcgctgccagcgcaccaccgtgccacgatgcgacccca 14807663  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||   ||||||||||  ||||||||||||||||| |||||||| || ||||| || ||||| |||||||  ||||||||||    
T  14807662 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgcccaaccatcatgccacga-ttctgcagaaacctgattt 14807564  T
Q  200 taagttcactct 211  Q
    |||||| |||||    
T  14807563 taagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 18812862 - 18812662
Alignment:
Q  20 aaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatcca 119  Q
    ||||| || ||||||| ||||||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||    
T  18812862 aaaatctgtaacaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttcca 18812764  T
Q  120 gtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaat 217  Q
    ||  |||||||  |||||| |||||||| ||||||||||||||| ||||| ||||| ||||| |||| ||  |||||||||||||||| |||||||||||    
T  18812763 gtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacga-ttcttcagaaacctgattttaagttaactctcacaat 18812666  T
Q  218 tctc 221  Q
    ||||    
T  18812665 tctc 18812662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4424028 - 4423940
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || || |||||||||||||||||||||||||    
T  4424028 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatatgtttctatttttcgctgccagcgcaccatcgtgccacg 4423940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3886243 - 3886334
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcaccc---aaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||| ||||||||| |||||    
T  3886243 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaaaaatatgtttctgttattcgctgccagcacaccatcgtaccacg 3886334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28251892 - 28252001
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||| || ||||||| ||||||||||| ||||| ||||| | ||    
T  28251892 tatagtaaaagtatcgcttaaaatttggaacaaatctgcactc-aaaatacgtttctgtttttcgctgccaacgcaccatcgtaccacgatgcgatccca 28251990  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  28251991 tcgtgccacga 28252001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2468423 - 2468513
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgtt 91  Q
    ||||||||||||||||||||| ||||||||||||| |||||  ||||||| |||||||||||| ||  |||||||||||||||||||||||    
T  2468423 tatagtaaaagtatcgcttaacatttggaacaaatctgcactaaaaaatacgtttctgttattcgcatccagcgcaccatcgtgccacgtt 2468513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 28251988 - 28252122
Alignment:
Q  77 ccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggc 176  Q
    ||||||||||||| ||||| | |||||||||||||    ||||||   ||||||||||  |||||||||||||||| |||||||||  |||||||||| |    
T  28251988 ccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtaccacgttgcctagccatcgtgcc 28252087  T
Q  177 acgatttctgcataacctgattttaagttcactct 211  Q
    |||||| ||||| | |||||||||||||| |||||    
T  28252088 acgattcctgcagatcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 18810677 - 18810483
Alignment:
Q  20 aaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatcca 119  Q
    ||||| || ||||||| ||||||||||||| ||||| | || ||| | |||||||||||||||||||||| || |||| ||||||||| | |    ||||    
T  18810677 aaaatctgtaacaaatctgcacccaaaaatgtgttt-tatttttatccgccagcgcaccatcgtgccacgatgtgaccccatcgtgccgcaatttttcca 18810579  T
Q  120 gtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||||  |||| | |||||||| ||||||||||||||| ||||| ||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  18810578 gtgccttgcctaaaaaaataaaacctcc-atcgtgccacgttgcccagccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 4423926 - 4423835
Alignment:
Q  124 cttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    ||||||| |||||||||||||||||| |||||||||||| |||| || ||| ||||||| ||||| | | |||||||||||| |||||||||    
T  4423926 cttgccttaaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgattcctgcagatcttgattttaagttaactctcaca 4423835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 43081869 - 43081716
Alignment:
Q  68 gccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacag 166  Q
    ||||||| |||||||||||||| || |||| |||||||||||||    ||||||  ||||||  |||| || ||||||||| ||||||||| ||||   |    
T  43081869 gccagcgtaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcca-tcgtgccactttgccttg 43081771  T
Q  167 ccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaattctc 221  Q
    || ||||| ||||||| ||||| || |||||||||||||| |||||||||||||||    
T  43081770 ccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaattctc 43081716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 43079494 - 43079346
Alignment:
Q  68 gccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcacag 166  Q
    |||||||||||||||||||||| || |||| |||||| ||||||    ||||||  ||||||  |||| || ||||||||| ||||||||||||||   |    
T  43079494 gccagcgcaccatcgtgccacgatgagaccccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctcca-tcgtgccacgttgccttg 43079396  T
Q  167 ccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaa 216  Q
    || ||||| ||||||| ||||| || |||||||||||||| ||||||||||    
T  43079395 ccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 43079346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17847538 - 17847482
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttct 57  Q
    ||||||||||||||| || |||||||||||||||| || | |  |||||||||||||    
T  17847538 tatagtaaaagtatccctcaaaatttggaacaaatctgaagctgaaaatatgtttct 17847482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18567577 - 18567363
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaa-tatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctc 99  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||| || |||||||||||| | ||||||||||||||||||||| |||| |||| |    
T  18567577 tatagtaaaagtatcgcttaaaatttggaacaatt-tgcaccaaaaaaatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgacccc 18567479  T
Q  100 atcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||| | ||||||||||    
T  18567478 atcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgattt 18567379  T
Q  200 taagttcactctcaca 215  Q
    |||||  |||||||||    
T  18567378 taagtcaactctcaca 18567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31435372 - 31435586
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaa-tatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctc 99  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||| || |||||||||||| | ||||||||||||||||||||| |||| |||| |    
T  31435372 tatagtaaaagtatcgcttaaaatttggaacaatt-tgcaccaaaaaaatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgacccc 31435470  T
Q  100 atcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||| | ||||||||||    
T  31435471 atcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgattt 31435570  T
Q  200 taagttcactctcaca 215  Q
    |||||  |||||||||    
T  31435571 taagtcaactctcaca 31435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27306554 - 27306767
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||  |||||| ||    
T  27306554 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgctagcgcaccatcgtgccacgaagcgacccca 27306653  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    |||| | |||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||| ||||| |||||    
T  27306654 tcgtgccacgatttttccaatgacttgcctcaaaactgaaacctccaatcgtgccacgttgtccagccatcgtgccacgattt-tgcaaaaccttatttt 27306752  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  27306753 aagttaactctcaca 27306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35593 - 35377
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| |||| |||||| ||||||| ||    
T  35593 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgctatttgctgccagcgcacgatcgggccacgatgcgacccca 35494  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||   ||||||||||  ||||||||||||||||||||||||||  ||| |||||| ||||||| ||||| | | |||||||    
T  35493 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagcaatcgtgccacgattcctgcagatcttgatttt 35394  T
Q  201 aagttcactctcacaat 217  Q
    ||||| |||||||||||    
T  35393 aagttaactctcacaat 35377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44528 - 44308
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||    
T  44528 tatagtaaaagtatcgcttaaaatttggtacaaatctgcacccaaaaatatgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgacccca 44429  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||| ||    ||||||   |||| |||||  ||||||||||||||||||||| |||| |||  |||||| ||||||| ||||| | | |||||||    
T  44428 tcgtgccatgatttttccagtgctttgcgtcaaacttgaaacctccaatcgtgccacattgcccagaaatcgtgccacgattcctgcagatcttgatttt 44329  T
Q  201 aagttcactctcacaattctc 221  Q
    ||||| |||||||||||||||    
T  44328 aagttaactctcacaattctc 44308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3878535 - 3878322
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||| |||||||||||||| ||||||| ||    
T  3878535 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaa-tacgtttctgttattcgctgccagcgtaccatcgtgccacgatgcgacccca 3878437  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||   ||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| |||||||  || |||||||    
T  3878436 tcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaatctgattt 3878338  T
Q  200 taagttcactctcaca 215  Q
    |||||| |||||||||    
T  3878337 taagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25542495 - 25542281
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaa-tatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctc 99  Q
    |||||||||||| ||||||||||||||||| |||| | ||| |||||| |||||||||||| || ||||||||||||||||||||||||| ||||| | |    
T  25542495 tatagtaaaagtttcgcttaaaatttggaataaatctacactcaaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatccc 25542396  T
Q  100 atcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattt 199  Q
    ||||||||||||    || |||  ||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| ||| ||||| | | ||||||    
T  25542395 atcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattt 25542297  T
Q  200 taagttcactctcaca 215  Q
    |||||| |||||||||    
T  25542296 taagttaactctcaca 25542281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26804537 - 26804450
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  26804537 tatagtaaaagtatcgcttaaaatttggaacaaatctgcaccc-aaaatacgtttctgttatttgctgccagcgcaccatcgtgccacg 26804450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1049620 - 1049813
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||                     |     
T  1049620 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcac---------------------ct 1049698  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||| | | |||||||    
T  1049699 tcgtgccacgatttttccagtaccttgcttcaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgatttt 1049798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 1047318 - 1047509
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||||||    ||||||  |||||    
T  1047318 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc 1047416  T
Q  129 ctcaaaa-ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaattctc 221  Q
    |  |||| || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||| || |||||||||||||| |||||||||||||||    
T  1047417 ccaaaaaactaaaacctcca-tcgtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaattctc 1047509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22392437 - 22392327
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||||||||||| |||||||||||||| |||||  |||||||  |||||||| || ||  ||||||||||||||| ||||||||||| | ||    
T  22392437 tatagtaaaagtatcgcttacaatttggaacaaatctgcactgaaaaatacatttctgttttttgcctccagcgcaccatcgtaccacgttgcgatccca 22392338  T
Q  101 tcgtgccacga 111  Q
    ||||| |||||    
T  22392337 tcgtggcacga 22392327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 26804436 - 26804344
Alignment:
Q  124 cttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaa 216  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||| |  |||||||||||||||| ||||||||||    
T  26804436 cttgcctcaaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacga-ttctgtagaaacctgattttaagttaactctcacaa 26804344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 40837067 - 40837156
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcac-ccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||| || ||||||||||||||||||| ||||| | |||||||||||||| || || ||||||||| |||||||||||||||    
T  40837067 tatagtaaaagtttcccttaaaatttggaacaaatctgcactcaaaaaatatgtttctatttttcgctgccagcacaccatcgtgccacg 40837156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 22137063 - 22136872
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  22137063 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 22136965  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||| ||  || ||||  ||||| ||||| || ||||  |||||||||||||||| |||||||||||||||    
T  22136964 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacaattctc 22136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 40552090 - 40551899
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  40552090 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 40551992  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||| ||  || ||||  ||||| ||||| || ||||  |||||||||||||||| |||||||||||||||    
T  40551991 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacaattctc 40551899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 9027502 - 9027687
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  9027502 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 9027600  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| || ||||  |||||||||||||||| |||||||||    
T  9027601 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 22108052 - 22107971
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  22108052 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 22107971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 40549812 - 40549731
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  40549812 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 40549731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 2935255 - 2935070
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| | ||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  2935255 aacaaatctgctctcaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 2935157  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| || ||||  |||||||||||||||| |||||||||    
T  2935156 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 22392340 - 22392290
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcacaat 217  Q
    ||||||||||||||||||| |||||||||||||||| || |||||||||||    
T  22392340 ccatcgtggcacgatttctccataacctgattttaaattaactctcacaat 22392290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45366510 - 45366451
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgtt 60  Q
    ||||||||||||| | ||||||||||||||||||| |||||  ||||||| |||||||||    
T  45366510 tatagtaaaagtaacccttaaaatttggaacaaatctgcactgaaaaatacgtttctgtt 45366451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 40837179 - 40837266
Alignment:
Q  132 aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattttaagttcactctcacaattct 220  Q
    |||||||||||||||| |||||||||||||  |  |||||||| ||||||| ||||| || |||||||||||||| ||||||||| ||||    
T  40837179 aaaactgaaacctcca-tcgtgccacgttgtccgaccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacagttct 40837266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2843 - 2623
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||| | ||    
T  2843 tatagtaaaagtttcgcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgatccca 2744  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||||  ||| |||||| ||| ||| ||||| | | |||||||    
T  2743 tcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagatcttgatttt 2644  T
Q  201 aagttcactctcacaattctc 221  Q
    ||||| |||||||||||||||    
T  2643 aagttaactctcacaattctc 2623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14982 - 14768
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || | ||    
T  14982 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgtcacgttgtgatccca 14883  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataa-cctgattt 199  Q
    |||||||||||||  |||||| |||||||||| ||||||||| ||| ||||| ||||||||| |  | |||||| ||||||| ||||| || ||||||||    
T  14882 tcgtgccacgaaatttccagtgacttgcctcataactgaaacttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattt 14783  T
Q  200 taagttcactctcac 214  Q
    |||||| ||||||||    
T  14782 taagttaactctcac 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8995468 - 8995255
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||| |||||||||||||||||||| || |||| ||    
T  8995468 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaa-tacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgacccca 8995370  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||  ||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||| || || | |||||||||    
T  8995369 tcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgatttt 8995270  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  8995269 aagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9019915 - 9019702
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||| |||||||||||||||||||| || |||| ||    
T  9019915 tatagtaaaagtatcgcttaaaatttggaacaaatctgcacccaaaa-tacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgacccca 9019817  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||||||||||    ||||||  ||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||| || || | |||||||||    
T  9019816 tcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgatttt 9019717  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  9019716 aagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15530447 - 15530661
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| | |||  |||||||| ||||||||||||||| |||| || ||    
T  15530447 tatagtaaaagtatcgcttaaaatttggaacaaacctgcacccaaaaatatgtttctataattcactgccagcacaccatcgtgccacgatgcggcccca 15530546  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatttt 200  Q
    |||| |||||||   || |||   ||||||||||  ||||||||||||| |||||||||| | ||||||||||| ||||||| ||||| | |||||||||    
T  15530547 tcgtaccacgaattttcgagtgctttgcctcaaacttgaaacctccaattgtgccacgttacccagccatcgtgccacgattcctgcagatcctgatttt 15530646  T
Q  201 aagttcactctcaca 215  Q
    ||||| |||||||||    
T  15530647 aagttaactctcaca 15530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 19227733 - 19227949
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaa-atatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctc 99  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||| |    
T  19227733 tatagtaaaagtttcccttaaaatttggaacaaatctgcacccaaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgacccc 19227832  T
Q  100 atcgtgccacgaaaaatccagtaacttgcctc-aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    ||||||||||||    ||||||  |||||||| |||| |||||||||| ||| ||||||||||| || |||||||| ||||||| ||||| | | | |||    
T  19227833 atcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctcc-atcatgccacgttgcccaaccatcgtgccacgattcctgcagatcttaatt 19227931  T
Q  199 ttaagttcactctcacaa 216  Q
    ||||||| ||||||||||    
T  19227932 ttaagttaactctcacaa 19227949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14507500 - 14507716
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || |||| |||||||||||||||||||| ||||||| ||    
T  14507500 tatagtaaaagtatcgcttaaaatttggaacaaatctacactcaaaaatatgtttctgtttttcgctggcagcgcaccatcgtgccacgatgcgacccca 14507599  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctc---aaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctga 196  Q
    ||||||||| |    ||||||  ||||  ||   ||||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||  || ||||    
T  14507600 tcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaatctga 14507697  T
Q  197 ttttaagttcactctcaca 215  Q
    ||||||||| |||||||||    
T  14507698 ttttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30729153 - 30729284
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||| ||    
T  30729153 tatagtaaaagtaccgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgccagcgcactatcgtgccacgttgtgacccca 30729252  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctca 132  Q
    ||||| |||||||  |||||| ||||||||||    
T  30729253 tcgtggcacgaaatttccagtgacttgcctca 30729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11983354 - 11983567
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| ||| |||||||||| ||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||    
T  11983354 tatagtaaaagtttcgtttaaaatttgaaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgacccca 11983453  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattt 199  Q
    |||||||||||    ||||||  ||| ||||| ||||||||||||| ||||| ||| ||||| || |||||||  ||||| |||||||  ||||||||||    
T  11983454 tcgtgccacgatttttccagt-gcttacctcacaactgaaacctcc-atcgtaccatgttgcccaaccatcgtaccacga-ttctgcagaaacctgattt 11983550  T
Q  200 taagttcactctcacaa 216  Q
    |||||| ||||| ||||    
T  11983551 taagttaactcttacaa 11983567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15533006 - 15533226
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    ||||||||||||||  ||||||||||||||||||| |||||| |||||||||||||| ||||| ||| |||||||||||| ||| |||||||||| ||||    
T  15533006 tatagtaaaagtataacttaaaatttggaacaaatctgcacctaaaaatatgtttctcttatttgctaccagcgcaccattgtgacacgttgcgatctca 15533105  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctca--aaa--ctgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctga 196  Q
    ||||| ||| |||  |||||| ||||||||||  |||  ||  ||||    |||||| ||||||||    |||||||||||||||||||| | | |||||    
T  15533106 tcgtggcacaaaatttccagtgacttgcctcacgaaattcttcaacc----atcgtggcacgttgcttctccatcgtggcacgatttctgtagatcctga 15533201  T
Q  197 ttttaagttcactctcacaattctc 221  Q
    ||||||||| |||||||||||||||    
T  15533202 ttttaagttaactctcacaattctc 15533226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 1072279 - 1072395
Alignment:
Q  99 catcgtgccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgatt 198  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| || |||||||  ||||||||||||| |||||||||    
T  1072279 catcgtgccacgaaaaatccaatgacttgcctcaaaacttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaacctgatt 1072378  T
Q  199 ttaagttcactctcaca 215  Q
    ||||||| |||||||||    
T  1072379 ttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 4816612 - 4816749
Alignment:
Q  20 aaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatcca 119  Q
    ||||| || ||||||| |||||| ||||||||||||||||| || ||| ||||| ||||||||||||||| ||||||| |||||||||||||    ||||    
T  4816612 aaaatctgtaacaaatctgcaccaaaaaatatgtttctgttttt-gctaccagcacaccatcgtgccacgatgcgaccccatcgtgccacgatttttcca 4816710  T
Q  120 gtaacttgcctcaaaactgaaacctccaatcgtgccacg 158  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  4816711 gtaccttgcctcaaaactgaaacctccaatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 15541465 - 15541596
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| |  ||||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||    
T  15541465 tatagtaaaagtgtaacttaaaatttggaacaaatctgcacctaaaaatatgtttctgctattcgctgccagcgtaccatcgtgccacgttgcgatctca 15541564  T
Q  101 tcgtgccacgaaaaatccagtaacttgcctca 132  Q
    ||||| || ||||  |||||| || |||||||    
T  15541565 tcgtggcatgaaatttccagtgacgtgcctca 15541596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 33311139 - 33310948
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  33311139 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 33311041  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||||||  || ||||| ||||| ||||| |||||||  |||||||||||||||| |||||||||||||||    
T  33311040 ccaaaaaactaaaacctcc-atcgtgccacgaagcccagccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaattctc 33310948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1072202 - 1072290
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||  || ||||||||||||||    
T  1072202 tatagtaaaagtattgcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgctgcctacgtaccatcgtgccacg 1072290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32279986 - 32279898
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacg 89  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||  ||| ||||||| || ||||||||||||||||||||||    
T  32279986 tataggaaaagtatcgcttaaaatttggaacaaatctgcactcaaaaatacatttatgttattcgccgccagcgcaccatcgtgccacg 32279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 33308870 - 33308682
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  33308870 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 33308772  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaatt 218  Q
    ||  |||||| |||||||| |||||||||||  || ||||| ||||| ||||| |||||||  |||||||||||||||| ||||||||||||    
T  33308771 ccaaaaaactaaaacctcc-atcgtgccacgaagcccagccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaatt 33308682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 24192630 - 24192730
Alignment:
Q  11 gtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacg 110  Q
    |||| |||||||||||||||||||| |||||  |||||||||||||||||||| ||||||||||| ||||| |||||| |||| | | ||||||| ||||    
T  24192630 gtattgcttaaaatttggaacaaatttgcactgaaaaatatgtttctgttattcgctgccagcgccccatcatgccacattgcaatcccatcgtggcacg 24192729  T
Q  111 a 111  Q
    |    
T  24192730 a 24192730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 24191533 - 24191633
Alignment:
Q  11 gtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacg 110  Q
    |||| |||||||||||||||||||| |||||  |||||||||||||||||||| ||||||||||| ||||| | |||| |||| | | ||||||| ||||    
T  24191533 gtattgcttaaaatttggaacaaatttgcactgaaaaatatgtttctgttattcgctgccagcgccccatcataccacattgcaatcccatcgtggcacg 24191632  T
Q  111 a 111  Q
    |    
T  24191633 a 24191633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 29755094 - 29755279
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  29755094 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 29755192  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| || ||||  |||||||||||||||| |||||||||    
T  29755193 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 32279885 - 32279794
Alignment:
Q  123 acttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||||||| ||||||||| ||||||||||||||||||| || | |||||| |||| || ||||| || ||||||||||||| |||||||||    
T  32279885 acttgcctcagaactgaaacatccaatcgtgccacgttgcccaacaatcgtgtcacgtttcctgcagaa-ctgattttaagttaactctcaca 32279794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 26066426 - 26066617
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttgc 128  Q
    ||||||| ||| |||||||||| |||| | || ||| | ||||||||||||| |||||||| || |||| |||||||||||||    ||||||  |||||    
T  26066426 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccattgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc 26066524  T
Q  129 ctcaa-aactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    |  || |||| |||||||| |||||||||||||||   ||| ||||| ||||| |||| ||  |||||||||||||||| |||||||||||||||    
T  26066525 ccaaataactaaaacctcc-atcgtgccacgttgccttgccgtcgtgccacga-ttctacagaaacctgattttaagttaactctcacaattctc 26066617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 26068697 - 26068882
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||||||    ||||||  ||||     
T  26068697 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc 26068795  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| ||| |||||||||||   ||| ||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  26068796 ccaaaaaactaaaacctcc-atcatgccacgttgccttgccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 15541631 - 15541679
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  15541631 ccatcgtggcacgatttctgcaaatcctgattttaagttaactctcaca 15541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 24191620 - 24191668
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||||    
T  24191620 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 24192717 - 24192765
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcaca 215  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||||    
T  24192717 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 30729298 - 30729352
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcacaattctc 221  Q
    ||||||||||||||||| |||| | |||||| ||||||| |||||||||||||||    
T  30729298 ccatcgtggcacgatttttgcagatcctgatattaagttaactctcacaattctc 30729352  T

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Target: scaffold0025 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 69624 - 69839
Alignment:
Q  5 gtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgt 104  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||| ||||||||||| ||| ||||| | ||| ||    
T  69624 gtaaaagtatcgcttaaaatttggaacaaatctgcaccc-aaaatatgtttctgtttttcgctgccagcacaccatcgtgcaacgatgcgatcccattgt 69722  T
Q  105 gccacgaaaaatccagtaacttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaag 203  Q
    || ||||    ||||||   ||||||||||  ||||||||||||||||||||||||||  |||||||||| ||||| |||||||  || |||||||||||    
T  69723 gctacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacga-ttctgcagaaatctgattttaag 69821  T
Q  204 ttcactctcacaattctc 221  Q
    || ||||| |||||||||    
T  69822 ttaactcttacaattctc 69839  T

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Target: scaffold0025; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 73352 - 73438
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccac 88  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||| ||||||||||||||    
T  73352 tatagtaaaagtatctcttaaaatttggaacaaatctgcaccc-aaaatatgtttctgtttttcgctgccagcacaccatcgtgccac 73438  T

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Target: scaffold0025; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 73454 - 73546
Alignment:
Q  125 ttgcctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgcat-aacctgattttaagttcactctcacaat 217  Q
    ||||||||||  ||||||||||||||||||||||||||  |||||||||| ||||| |||||||| || ||||||||||||| ||||| |||||    
T  73454 ttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacga-ttctgcataaatctgattttaagttaactcttacaat 73546  T

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Target: scaffold0068 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 29124 - 29014
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctca 100  Q
    |||||||||||| | |||||||||||| ||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||    
T  29124 tatagtaaaagttttgcttaaaatttgtaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgacccca 29025  T
Q  101 tcgtgccacga 111  Q
    |||||||||||    
T  29024 tcgtgccacga 29014  T

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Target: scaffold0068; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 29005 - 28940
Alignment:
Q  151 gtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaa 216  Q
    |||||||||||| ||||||||||| ||||| |||||||  |||||||||||||||| ||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaa 28940  T

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Target: scaffold0339 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3960 - 3868
Alignment:
Q  1 tatagtaaaagtatcgcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgc 93  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  3960 tatagtaaaagtattgcttaaaatttgaaacaaatctgcacccaaaaatacgtttatgttattcgctgccatcgcaccatcgtgccacgttgc 3868  T

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Target: scaffold0339; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 3794 - 3747
Alignment:
Q  167 ccatcgtggcacgatttctgcataacctgattttaagttcactctcac 214  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||||||||    
T  3794 ccatcgtggcacgatttctacatatcctaattttaagttaactctcac 3747  T

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Target: scaffold0140 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 24375 - 24184
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    ||||||  ||||     
T  24375 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 24277  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcacaattctc 221  Q
    ||  |||||| |||||||| |||||||| ||  || ||||  ||||| ||||| || ||||  |||||||||||||||| |||||||||||||||    
T  24276 ccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacaattctc 24184  T

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Target: scaffold0140; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 22100 - 22019
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacga 111  Q
    ||||||| ||| ||||||||||||||| | || ||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  22100 aacaaatctgctcccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 22019  T

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Target: scaffold0472 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 6125 - 5927
Alignment:
Q  16 gcttaaaatttggaacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaa 115  Q
    |||| ||||||| ||||||| ||||||||||||||||||| | || ||| | |||||||||||||||||||| | || |||| |||| ||||||||        
T  6125 gctttaaatttgtaacaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccatgatgagaccccatcatgccacgatttt 6027  T
Q  116 tccagtaacttgcct-caaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctca 213  Q
    ||||||  |||||||  |||||| |||||||| |||||||| ||  || ||||| ||||| ||||| || ||||  |||||||||||||||| |||||||    
T  6026 tccagtgccttgcctaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctca 5929  T

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Target: scaffold0127 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 12869 - 13054
Alignment:
Q  29 aacaaatatgcacccaaaaatatgtttctgttattagctgccagcgcaccatcgtgccacgttgcgacctcatcgtgccacgaaaaatccagtaacttg- 127  Q
    ||||||| ||| |||||||||| |||| | || ||| | |||||||||||||||||||||| || |||| |||||||||||||    ||||||  ||||     
T  12869 aacaaatctgctcccaaaaatacgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc 12967  T
Q  128 cctcaaaactgaaacctccaatcgtgccacgttgcacagccatcgtggcacgatttctgca-taacctgattttaagttcactctcaca 215  Q
    ||  |||||| |||||||| |||||||||||||||   | ||||||| ||||| |||||||  |||||||||||||||| |||||||||    
T  12968 ccaaaaaactaaaacctcc-atcgtgccacgttgccttgacatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 13054  T

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