View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18403_low_29 (Length: 209)
Name: NF18403_low_29
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 6130266 - 6130432
Alignment:
| Q |
24 |
gggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttgaata |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||| | |
|
|
| T |
6130266 |
gggcctaattcagctgcgaggtgtagtaagttatttccaaatatgtctacggacgttttaagccctttttggccatctatctcatatatgagtttgaaca |
6130365 |
T |
|
| Q |
124 |
ctctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataa |
190 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6130366 |
ctttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccattgcccataa |
6130432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 6105563 - 6105394
Alignment:
| Q |
21 |
gaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttga |
120 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||| ||||||||||| || ||||| ||| ||||||||||||| || || |||||||||||| |
|
|
| T |
6105563 |
gaagggcctaactcagctgcgaggtgtaataagttattttcaaatatgtctttggtagttttcaactctttttggccttccatctcgtatatgagtttga |
6105464 |
T |
|
| Q |
121 |
atactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataa |
190 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6105463 |
acactttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtatttgtccatggcccataa |
6105394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 6860707 - 6860873
Alignment:
| Q |
16 |
aagaagaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgag |
115 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||| ||| ||||| ||||||| |||||||| || | | ||| ||| |
|
|
| T |
6860707 |
aagaggaagggcctaattcagctgcaaggtggagtaagttgtttccaaatatgtctatggatgttttcaacccttcatggccttcaatcttatatacgag |
6860806 |
T |
|
| Q |
116 |
tttgaatactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccata |
182 |
Q |
| |
|
| |||| || ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6860807 |
tctgaagacactggctttacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccata |
6860873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 11791830 - 11791882
Alignment:
| Q |
138 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataa |
190 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||| || ||| ||||||| |
|
|
| T |
11791830 |
ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagcccataa |
11791882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University