View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_3 (Length: 535)
Name: NF18403_low_3
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 10 - 512
Target Start/End: Original strand, 3837430 - 3837935
Alignment:
| Q |
10 |
agtagcaaaggatatcaaagtaaagggaaacaacaaaaacttttatgtcttattacctttgtaacggaagaaggagaagactcggttatccttgttgatt |
109 |
Q |
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| T |
3837430 |
agtaggaaaggatagcaaagaaaagagaaagaacataaatttttatgtcttattacctttgtaacggaagaaggagaagactcggttatccttgttgatt |
3837529 |
T |
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| Q |
110 |
gttgatctgatgcaaaatcttggagatccttaaaaaaggtgttaataaatcaaatggttaagtaactggtttaagaataaattaacaggtcaacttaagg |
209 |
Q |
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| T |
3837530 |
gttgatctggtgcaaaatcttggagatccttaaaaaaggtgttaataaatcaaatggttaagtaactggtttaagaataaattaacaggtcaacttaagg |
3837629 |
T |
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| Q |
210 |
ggaattccgtttaactcaaccgataaac--agcagtttcttaaccaaactaattagagaacataccttactatacaatacaaagcttctgcggtaaatta |
307 |
Q |
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| T |
3837630 |
ggaattccgtttaactcaaccgataaacatagcagtttcttaaccaaactaattagagaacataccttacaatacaattcaaagcttctgcggtaaatta |
3837729 |
T |
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| Q |
308 |
cattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaaataaaacacttgccacacttcaatgatagattcattgg |
407 |
Q |
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| T |
3837730 |
cattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaagtaaaacacttgccacacttcaatgatagattcattgg |
3837829 |
T |
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| Q |
408 |
tact-aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatccatttcgtcagggtaaccgctagatgccaaggtac |
506 |
Q |
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| T |
3837830 |
tactaaaactgtaccaattcaaaagctcgttgatagcacatagctgccttcttagcataataatccatttcgtcagggtcactgctagatgccaagttac |
3837929 |
T |
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| Q |
507 |
ggcaag |
512 |
Q |
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|||||| |
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| T |
3837930 |
ggcaag |
3837935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 3831170 - 3831398
Alignment:
| Q |
16 |
aaaggatatcaaagtaaagggaaacaacaaaaacttttatgtcttattacctttgtaacggaagaaggagaagactcggttatccttgt---tgattgtt |
112 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||| | |||||||| || |||||| || ||| | |||||| |
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| T |
3831170 |
aaaggatagcaaagtaaagggaaacaacataaacttttatgtctgattaccttggtaccaaaagaaggataaaactcggatacggatgtcattaattgtt |
3831269 |
T |
|
| Q |
113 |
gatctgatgc-aaaatcttggagat--ccttaaaaaaggtgttaataaatcaaatggttaagtaactggtttaagaataaattaacaggtcaacttaagg |
209 |
Q |
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| T |
3831270 |
catcttctgccaaaattttcttgatacccttgaaaatggtgttagtaaatgaaatggttaagcaactagtttaagaataaattagcatgtcatcttaagg |
3831369 |
T |
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| Q |
210 |
ggaattccgtttaactcaaccgataaaca |
238 |
Q |
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| T |
3831370 |
gaaacgccgtttaactcaacccataaaca |
3831398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 296 - 471
Target Start/End: Original strand, 3831536 - 3831719
Alignment:
| Q |
296 |
tgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgtta--cacaatttttacaagtcaacaaataaaacacttgccacacttcaat |
393 |
Q |
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||||||| ||| |||| ||| ||||||||||||||| | |||| ||||| || ||||||||||||||||||| || ||||||| |||||||||||| |
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| T |
3831536 |
tgcggtacatttcatttgaaggatcctatataaaacaggaaacactttgttaagcataatttttacaagtcaacaagtacaacactttccacacttcaat |
3831635 |
T |
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| Q |
394 |
gatagattcattggtact------aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatc |
471 |
Q |
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| T |
3831636 |
gatacattcattggtattgaacaaaaattgtaccaaatcaaaagcttgttgatagcatgcaattgccttctttgaataataatc |
3831719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 8587287 - 8587336
Alignment:
| Q |
355 |
tttacaagtcaacaaataaaacacttgccacacttcaatgatagattcat |
404 |
Q |
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||||||||||||| | ||||| |||| |||||||||||||||| |||||| |
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| T |
8587287 |
tttacaagtcaacgagtaaaatacttcccacacttcaatgatacattcat |
8587336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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