View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_6 (Length: 446)
Name: NF18403_low_6
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 3191091 - 3191401
Alignment:
| Q |
8 |
aatggtgattgataactggttttcatggtcacattggctacaataataaacttcattgagaatcattggcatgtttttcggactccctcattgctataaa |
107 |
Q |
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| T |
3191091 |
aatggtgattgataactggttttcatggtcacattggctacaataataaacttcattgagaatcattggcatgtttttcggactccctcgttgctataaa |
3191190 |
T |
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| Q |
108 |
gttattaaatgaaatggtccaaccttttcatgagttcgcatgtgaagttccaacatactcttcaagaaggaaatcaatgcgctgatttttccgccaaaag |
207 |
Q |
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| T |
3191191 |
gttattaaatgaaatggtccaaccttttcatgagttcgcatgtgaagttccaacgtactcttcaagaaggaaatcaatgtgctgatttttcc-ccaaaag |
3191289 |
T |
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| Q |
208 |
ggttcttctcaacttaactctgaatattgtgtcatctccgccaatggaggtggagtttgctactgccatgcttgcatatgctttgagaatctccattcct |
307 |
Q |
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| T |
3191290 |
ggttcttctcaacttaactctgaatattgtgtcatctccgccaatggaggtggagtttgctactgccatgcttgcatatgctttgagaatctccattcct |
3191389 |
T |
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| Q |
308 |
agggagtagttg |
319 |
Q |
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|||||||||||| |
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| T |
3191390 |
agggagtagttg |
3191401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 3191449 - 3191521
Alignment:
| Q |
366 |
gtattggcttgaatgagagaaggaataaaaggtttcatgcaaaatgattttaccaagtattttcttgatgatg |
438 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3191449 |
gtattggcttgaatgagagaaggaatagaaggtttcatgcaaaatgattttaccaagtattttcttgatgatg |
3191521 |
T |
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