View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18403_low_8 (Length: 415)
Name: NF18403_low_8
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18403_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 405
Target Start/End: Complemental strand, 45891254 - 45890879
Alignment:
| Q |
30 |
cctttatctgctatattgactattaaggaatcaatgtgttagtatcaagaaagagtatataactttaaatttccttaacagcattgatttatggacattc |
129 |
Q |
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| T |
45891254 |
cctttatctgctatattgactattaagtaatcaatgtgttggtatcaagaaagagtatataactttaaatttccttaacagcattgatttatggacattc |
45891155 |
T |
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| Q |
130 |
tatccgtagctccactggcatgtcaaacattcaaaagcttataggagtgtgtccccaggtgtctctcattctatatatttttcttgtatgatacacaatt |
229 |
Q |
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| T |
45891154 |
tatccgtagctccactggcatgtcaaacattcaaaagcttataggagtgtgtccccaggtgtctctcattctacatatttttcttgtatgatacacaatt |
45891055 |
T |
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| Q |
230 |
tacactgtaaaattaagtttgcaaatcatacgtcattatatctgctagacgcttatgaattggaatttttctgtttcactaaatcagatcacacaacttg |
329 |
Q |
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| T |
45891054 |
tacactgtaaaattaagtttgcaaatcatacatcattatatctgctagacgcttatgaattggaatttttctgtttcactaaatcagatcacacaacttg |
45890955 |
T |
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| Q |
330 |
tacgtataatggtgctacaataaatacattgaatgccttttactaaatcttataatctgcagtttgatatcctatg |
405 |
Q |
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| T |
45890954 |
tacttataatggtgctacaataaatacattgaatgccttttactaaatcttataatctgcagtttgatatcctatg |
45890879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 12983121 - 12983238
Alignment:
| Q |
76 |
aagaaagagtatataacttta-aatttccttaacagcattgatttatggacattctatccgtagctccactggcatgtcaaacattcaaaagcttatagg |
174 |
Q |
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| T |
12983121 |
aagaaagagtatgtaacttttcaatttcctta-cagcattgatttatggaaattcggtccgaagctctagtggcatgtcaaacattcgaaagattattgg |
12983219 |
T |
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| Q |
175 |
agtgtgtccccaggtgtct |
193 |
Q |
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| T |
12983220 |
agtgtgtccccaggtgtct |
12983238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 22797670 - 22797620
Alignment:
| Q |
315 |
agatcacacaacttgtacgtataatggtgctacaataaatacattgaatgc |
365 |
Q |
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| T |
22797670 |
agatcacacaccttgtatttataatggttttacaataaatacattgaatgc |
22797620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 47056956 - 47056916
Alignment:
| Q |
323 |
caacttgtacgtataatggtgctacaataaatacattgaat |
363 |
Q |
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| T |
47056956 |
caacttgtacttataatggtaatacaataaatacattgaat |
47056916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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