View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18403_low_9 (Length: 408)

Name: NF18403_low_9
Description: NF18403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18403_low_9
NF18403_low_9
[»] chr1 (9 HSPs)
chr1 (79-265)||(34307139-34307326)
chr1 (74-264)||(2509028-2509219)
chr1 (77-265)||(39249862-39250051)
chr1 (79-265)||(46901736-46901923)
chr1 (77-262)||(19258672-19258857)
chr1 (79-262)||(28647359-28647542)
chr1 (161-264)||(29099821-29099923)
chr1 (133-276)||(9642921-9643067)
chr1 (185-263)||(10146971-10147049)
[»] scaffold0062 (1 HSPs)
scaffold0062 (79-264)||(6722-6908)
[»] chr2 (11 HSPs)
chr2 (71-265)||(33732572-33732766)
chr2 (79-265)||(16089825-16090010)
chr2 (99-265)||(14572998-14573165)
chr2 (80-263)||(3830900-3831081)
chr2 (79-266)||(44958115-44958303)
chr2 (79-265)||(36315564-36315751)
chr2 (79-262)||(37914238-37914421)
chr2 (79-265)||(37498864-37499053)
chr2 (105-260)||(41188777-41188932)
chr2 (79-262)||(6376240-6376418)
chr2 (134-262)||(24137149-24137281)
[»] chr4 (15 HSPs)
chr4 (79-265)||(3672277-3672464)
chr4 (79-265)||(6112633-6112819)
chr4 (79-265)||(44275709-44275895)
chr4 (74-265)||(28093092-28093284)
chr4 (74-265)||(35544915-35545107)
chr4 (79-265)||(49243818-49244004)
chr4 (79-265)||(21390957-21391143)
chr4 (74-265)||(7217768-7217960)
chr4 (79-265)||(46192362-46192549)
chr4 (114-265)||(45829294-45829445)
chr4 (91-263)||(51038768-51038942)
chr4 (91-263)||(52191214-52191386)
chr4 (204-263)||(25437012-25437071)
chr4 (223-264)||(43245522-43245563)
chr4 (175-263)||(54849793-54849881)
[»] chr8 (15 HSPs)
chr8 (79-264)||(10203668-10203854)
chr8 (79-266)||(18184555-18184742)
chr8 (90-265)||(44081783-44081959)
chr8 (90-265)||(30432342-30432517)
chr8 (79-265)||(31318808-31318995)
chr8 (79-265)||(42162601-42162788)
chr8 (79-265)||(36189219-36189404)
chr8 (79-266)||(12665346-12665535)
chr8 (79-264)||(43186031-43186216)
chr8 (79-262)||(33726017-33726201)
chr8 (161-263)||(3690686-3690788)
chr8 (133-248)||(42668838-42668952)
chr8 (177-263)||(31547-31633)
chr8 (127-220)||(38845073-38845165)
chr8 (141-246)||(35849516-35849623)
[»] chr3 (21 HSPs)
chr3 (79-264)||(46111945-46112131)
chr3 (79-265)||(34749899-34750086)
chr3 (79-265)||(21559564-21559751)
chr3 (79-265)||(22894683-22894869)
chr3 (77-265)||(36749409-36749598)
chr3 (79-265)||(43999992-44000179)
chr3 (79-265)||(51339785-51339969)
chr3 (99-265)||(36370359-36370526)
chr3 (74-265)||(30735492-30735683)
chr3 (73-266)||(48200687-48200881)
chr3 (79-265)||(38231296-38231482)
chr3 (79-262)||(39467103-39467286)
chr3 (172-265)||(29460663-29460756)
chr3 (172-265)||(29471515-29471608)
chr3 (105-260)||(20856182-20856334)
chr3 (116-262)||(39072317-39072458)
chr3 (138-265)||(50966134-50966257)
chr3 (138-265)||(51069269-51069392)
chr3 (79-176)||(29472901-29472998)
chr3 (125-246)||(53638157-53638278)
chr3 (168-261)||(29820390-29820483)
[»] chr5 (17 HSPs)
chr5 (116-265)||(1815655-1815804)
chr5 (79-262)||(2237282-2237466)
chr5 (79-265)||(39370930-39371117)
chr5 (79-262)||(13347134-13347318)
chr5 (93-265)||(9408054-9408227)
chr5 (74-265)||(40887938-40888130)
chr5 (79-257)||(14831555-14831734)
chr5 (90-265)||(27553386-27553561)
chr5 (91-229)||(31800597-31800735)
chr5 (112-262)||(19596103-19596252)
chr5 (172-265)||(33404531-33404624)
chr5 (124-265)||(17225322-17225461)
chr5 (116-265)||(4300582-4300731)
chr5 (1-61)||(14626634-14626694)
chr5 (105-259)||(41003879-41004031)
chr5 (79-197)||(42683670-42683789)
chr5 (139-264)||(19124534-19124657)
[»] scaffold0043 (1 HSPs)
scaffold0043 (79-264)||(87164-87350)
[»] chr7 (25 HSPs)
chr7 (74-265)||(26972199-26972391)
chr7 (74-265)||(45782656-45782848)
chr7 (71-265)||(42220957-42221151)
chr7 (79-265)||(28307496-28307683)
chr7 (79-266)||(34828068-34828254)
chr7 (79-265)||(36346566-36346752)
chr7 (79-271)||(31148287-31148479)
chr7 (79-265)||(34108429-34108616)
chr7 (91-265)||(30887703-30887877)
chr7 (79-265)||(7699884-7700071)
chr7 (79-265)||(7700082-7700269)
chr7 (79-265)||(7700280-7700467)
chr7 (79-265)||(7700478-7700665)
chr7 (79-262)||(5811165-5811348)
chr7 (105-264)||(21807350-21807509)
chr7 (79-262)||(13108154-13108336)
chr7 (116-262)||(23980137-23980283)
chr7 (79-226)||(46475066-46475214)
chr7 (124-247)||(36957450-36957573)
chr7 (126-262)||(15020288-15020421)
chr7 (122-263)||(38321014-38321155)
chr7 (136-229)||(20086687-20086780)
chr7 (66-170)||(29953560-29953665)
chr7 (173-226)||(42950109-42950162)
chr7 (117-149)||(38160607-38160639)
[»] chr6 (6 HSPs)
chr6 (79-276)||(3986907-3987104)
chr6 (99-265)||(13697572-13697737)
chr6 (79-262)||(14022940-14023123)
chr6 (74-265)||(3118043-3118235)
chr6 (90-265)||(15345672-15345845)
chr6 (79-262)||(24208450-24208633)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 34307139 - 34307326
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacac-cccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||| ||||||    
T  34307139 aaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttca 34307238  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  34307239 tatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagag 34307326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 74 - 264
Target Start/End: Complemental strand, 2509219 - 2509028
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  ||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||||| ||||| |    
T  2509219 taaggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctt 2509120  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  2509119 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 39249862 - 39250051
Alignment:
Q  77 gaaaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcacccctttt 175  Q
    |||||||||||  ||||||||||||| ||||||| ||||||||||||||| |||| |||||| |||||||||||||||| ||||||||| || || ||||    
T  39249862 gaaaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatccttttt 39249961  T
Q  176 catctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||| |||||||||||||||||    
T  39249962 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 39250051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 46901736 - 46901923
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacc-ccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| | |||| |||||| |||||||||||||| |||||| | |||  ||||| |||||||||| || |||||||||||| ||||||    
T  46901736 aaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttca 46901835  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||| ||||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  46901836 tctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 46901923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 262
Target Start/End: Original strand, 19258672 - 19258857
Alignment:
Q  77 gaaaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttc 176  Q
    |||||||||||  |||||||| ||||  |||||  ||| ||||||||||||||||||||| |||||||| |||||| | || | |||| |||||||||||    
T  19258672 gaaaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 19258771  T
Q  177 atctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||||| ||||||||||||||| || |||||||||| | ||||| ||||||| |||||||| ||||| || ||||| ||||||||    
T  19258772 atctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataa 19258857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 28647542 - 28647359
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| ||||  |||||  ||| ||||||| ||||||||||||| |||||||| |||||| | || | |||| |||||||||||||    
T  28647542 aaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 28647443  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    || |||||||||||||||||| |  | |||||||| ||||||| ||||||| | ||||||  |||| |||||||||||||||||    
T  28647442 ctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataa 28647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 29099923 - 29099821
Alignment:
Q  161 atcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtat 260  Q
    ||||||||||||||| || |||| ||||||||||||||  || ||||||||||||||||||| || |||  ||||||| || ||||||||||| ||||||    
T  29099923 atcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtat 29099825  T
Q  261 aaga 264  Q
    ||||    
T  29099824 aaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 9642921 - 9643067
Alignment:
Q  133 tagggatattttagtaattttatattatatcatcaccccttt-tcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatg 231  Q
    ||||||| |||||||||||| | || ||||||||||||| || ||||||||||||||| ||||||||  | ||||||||| | ||||||| ||| ||| |    
T  9642921 tagggatgttttagtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaag 9643020  T
Q  232 gtgtatgtcacctaag--gtggttcatgtataagagtcctttaaata 276  Q
    || |||| || |||||  ||||||||| |||||| || ||| |||||    
T  9643021 gtatatgccatctaaggtgtggttcatatataagtgttcttcaaata 9643067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  185 tttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    ||||| ||||||||| || |||||||| |||||||||  || ||| |||||||| ||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 79 - 264
Target Start/End: Complemental strand, 6908 - 6722
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||| |||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||| || |||||||||||| ||||||    
T  6908 aaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttca 6809  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  6808 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 71 - 265
Target Start/End: Complemental strand, 33732766 - 33732572
Alignment:
Q  71 aaataagaaaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccc 170  Q
    ||||||| |||||||||  |||||||| |||| ||||||| ||||||||||||||||| | |||||| |||||||||||||||| || |||||| |||||    
T  33732766 aaataaggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccc 33732667  T
Q  171 cttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
     |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  33732666 tttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 33732572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 16090010 - 16089825
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||  |||| ||    
T  16090010 aaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt-at 16089912  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||    
T  16089911 ctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagag 16089825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 14573165 - 14572998
Alignment:
Q  99 ttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgttttt 197  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgttttt 14573066  T
Q  198 gctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||    
T  14573065 gctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagag 14572998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 3830900 - 3831081
Alignment:
Q  80 aaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatc 179  Q
    ||||||||  |||||||| |||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||| || | || |||||| |||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  180 tcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    |||||||||||||||||||| ||||||||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataag 3831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 44958303 - 44958115
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| | |||| ||||||| ||||||||| |||| |||||||||||| |||||||||||||||| || |||||||||||| |||| |    
T  44958303 aaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttta 44958204  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagt 266  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  44958203 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagt 44958115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 36315751 - 36315564
Alignment:
Q  79 aaaaagataactagaca-cctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| |||||||  |||||| ||||||||||||| ||||||| |||| ||||||| | |||| | || | || |||||| ||||| |    
T  36315751 aaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctcttttta 36315652  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  36315651 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 36315564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 37914238 - 37914421
Alignment:
Q  79 aaaaagataactagacacc-tttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||||  |||||| |||||||||||||||||||   |||| ||||||| | |||| | || | || |||||||||||| |    
T  37914238 aaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggg-tattttaatcatttcacatcacattatcaccccttttta 37914336  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  37914337 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataa 37914421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 37498864 - 37499053
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtaca-ccccatgtgttagggatattttagtaattttatattatatcatcacccc--tttt 175  Q
    |||||||||  |||||||| ||||  |||||| ||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||   ||||    
T  37498864 aaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttttt 37498963  T
Q  176 catctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||| || |||||||||||||||||  ||||||| | |||||| ||  |||| ||||| || ||||||||    
T  37498964 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagag 37499053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 41188932 - 41188777
Alignment:
Q  105 atacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgt 204  Q
    |||||| ||| ||||||| | ||||||| || |||||||||||||||||| || | ||||||| |||||||||| || | ||||||||||||||| || |    
T  41188932 atacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacat 41188833  T
Q  205 gtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtat 260  Q
    |||| |||| ||| | ||| ||||| |||||||||||| ||| |||||||||||||    
T  41188832 gtcataaatatgtatagatataaaagggtgtatgtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 6376240 - 6376418
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | ||||  |||||| ||  ||||||| | |||||||||| | |||||||||||||| | || | ||| |||||| |||||||    
T  6376240 aaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttcat 6376339  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||||||||||||     || || |||||||||||||||||| ||||||| |||||||| |||||| ||||||| ||||||||    
T  6376340 ctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 6376418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 262
Target Start/End: Original strand, 24137149 - 24137281
Alignment:
Q  134 agggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggat----gtaaaa 229  Q
    |||| |||||||||||||| | || | ||| ||| ||||||||||||||||||||||||||||||  || |||||||||||||||||| |    || |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  230 tggtgtatgtcacctaaggtggttcatgtataa 262  Q
     |||||||  |||||||||||||| ||||||||    
T  24137249 gggtgtataccacctaaggtggtttatgtataa 24137281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 3672464 - 3672277
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||| ||| |||| |||||||||||||||||||||| ||||| |||||| ||||| ||||||| || || |||||||||||| ||||||    
T  3672464 aaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttca 3672365  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3672364 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagag 3672277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 6112819 - 6112633
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||  |||| |||||||||||||||||||| |||||| |||||| ||||| |||||||||| || ||||||||| || |||||||    
T  6112819 aaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttcat 6112720  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  6112719 ctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagag 6112633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 44275895 - 44275709
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |||| ||    
T  44275895 aaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaat 44275796  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||| ||||||  ||||||||||||||||||||  ||||||||||| |||| |||||||||||||| |||||||||||    
T  44275795 ctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagag 44275709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 28093092 - 28093284
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  |||||| | |||| ||||||||||||||||||||||| |||| |||||| ||||| |||| ||||| || |||||||||||| |    
T  28093092 taaggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctt 28093191  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  28093192 tttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 28093284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 35545107 - 35544915
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatatttt-agtaattttatattatatcatcacccct 172  Q
    ||||||||||||||  |||||||| |||| |||||||  ||||||||||| ||||||||||||| |||||| |||||||||| || ||||||||||||||    
T  35545107 taagaaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccct 35545008  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||| || |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||  |||||||| |||||||||||||||||    
T  35545007 ttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagag 35544915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 49244004 - 49243818
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | |||| ||||||| |||||||||||| |||||| |||||| |||||||||||||||| || ||||||||||   |||| ||    
T  49244004 aaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcacttttttttat 49243905  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  49243904 ctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagag 49243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 21390957 - 21391143
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| |||| ||||||| | ||||||||||| |||||||||||| |||||||||||||||| || ||||  |||| | |||||||    
T  21390957 aaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcat 21391056  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  21391057 ctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagag 21391143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 7217960 - 7217768
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  || ||||| |||| ||||||| |||||||||||||| |||||||||  | |||||||||||||||| || |||||||||||| |    
T  7217960 taaggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctt 7217861  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||| ||||||| ||| ||||||||||| ||||||||||||||||||| | ||| ||| |||||||| |||||||||||||| |||||||||||    
T  7217860 ttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagag 7217768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 46192549 - 46192362
Alignment:
Q  79 aaaaagataactagacacc-tttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||||  |||||| |||||||||||||||||||   |||| ||||||| | |||| | || | || |||||||||||| |    
T  46192549 aaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcaccccttttta 46192450  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||    
T  46192449 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagag 46192362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 45829294 - 45829445
Alignment:
Q  114 ttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaat 213  Q
    ||||||||||||||| ||  |||| ||||||| | |||| | || | || |||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  45829294 ttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaat 45829393  T
Q  214 gtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  45829394 gtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagag 45829445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 91 - 263
Target Start/End: Complemental strand, 51038942 - 51038768
Alignment:
Q  91 agacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcacccc-ttttcatctcttctttc 188  Q
    |||||||||||| |||  || ||| ||||||||||| |||||  || |||||||||||||||| | || | | ||||||||| |||||||||||||||||    
T  51038942 agacaccttttttcatgtacatctcatgtacacccctatgtggcagagatattttagtaatttcacatcacaccatcacccccttttcatctcttctttc 51038843  T
Q  189 aatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    ||||||||||  || |||||||| ||||||||| ||| |||   |||||| ||||||||||||| ||| ||||||    
T  51038842 aatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 263
Target Start/End: Original strand, 52191214 - 52191386
Alignment:
Q  91 agacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaa 190  Q
    ||||||| ||||  |||||| |||  |||||||||||| |||||||  ||||||||||||||   || | ||||||| | | | | |||  |||||||||    
T  52191214 agacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctcttatcctttctttcaa 52191313  T
Q  191 tgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    ||||||||  || |||||||| | ||||||| ||| ||| ||| |||| ||||||||||||| ||||||||||    
T  52191314 tgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataag 52191386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 25437012 - 25437071
Alignment:
Q  204 tgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    |||||||| ||||| ||||||| ||| |||||||||||||||||||||| ||||||||||    
T  25437012 tgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataag 25437071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 43245563 - 43245522
Alignment:
Q  223 tgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  43245563 tgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 54849881 - 54849793
Alignment:
Q  175 tcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    ||||||||||||||||| ||||||  || |||||||| || |||||| | | |||  ||||| |  | |||||||||||||||||||||    
T  54849881 tcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtacgctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 79 - 264
Target Start/End: Complemental strand, 10203854 - 10203668
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| ||||||  |||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| ||||||    
T  10203854 aaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctttttca 10203755  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  10203754 tctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 18184742 - 18184555
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | |||| ||||||| | ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18184742 aaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcat 18184643  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagt 266  Q
    |||||| |||||||||||  | ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  18184642 ctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagagt 18184555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 90 - 265
Target Start/End: Complemental strand, 44081959 - 44081783
Alignment:
Q  90 tagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttc 188  Q
    |||||||| |||| ||||||||||||||||||||||| |||| |||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||    
T  44081959 tagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttc 44081860  T
Q  189 aatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||| | |||||| |||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||    
T  44081859 aatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 44081783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 90 - 265
Target Start/End: Complemental strand, 30432517 - 30432342
Alignment:
Q  90 tagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttca 189  Q
    |||||||| |||| ||||||| ||||||||||| ||||| | ||| || |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  30432517 tagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttcatctcttctttca 30432418  T
Q  190 atgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||| ||||||||||||||||||||| | ||||| |||||||| || |||||||||||||||||||||||    
T  30432417 atgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagag 30432342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 31318995 - 31318808
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| | |||| |||||||||||||| |||||||| |||| |||||  ||||| |||||||||| || |||||||||||| ||||||    
T  31318995 aaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttca 31318896  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||    
T  31318895 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagag 31318808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 42162788 - 42162601
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||  |||| ||||||||| ||||||||||||| |||| |||||| ||||| |||||||||| || |||||||||||| ||||||    
T  42162788 aaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 42162689  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  42162688 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagag 42162601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 36189404 - 36189219
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| |||| |||||||  ||||||||||||| || |||||||| ||||||| ||||||||||| |||||||||| |||||||||    
T  36189404 aaaaagataggtagacaccctttttcatacaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttcat 36189306  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||||    
T  36189305 ctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 36189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 12665535 - 12665346
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttc- 176  Q
    |||||||||  |||||| | |||| | ||||| ||||||||| |||| |||||||||||| |||||||||||||||| || |||||||||||| ||||      
T  12665535 aaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttt 12665436  T
Q  177 atctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagt 266  Q
    ||||||||||||||||||||||| || ||| |||||||||||||  ||||||| |||||||| |||||||||||||||||||||||||||    
T  12665435 atctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagagt 12665346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 264
Target Start/End: Complemental strand, 43186216 - 43186031
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | |||| |||||||||||||||||||||| |||| ||||||  |||| ||||||||||||| |||||||||||  |||||||    
T  43186216 aaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttcat 43186117  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    || |||||||||||||||||| || | |||||||||||||  | |||||||  || |||| ||||||| |||||| ||||||||||    
T  43186116 cttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 33726201 - 33726017
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccc-cttttca 177  Q
    |||||||||  |||||||| ||||  |||||| ||  ||||||||  |||||||||||| |||||||||||||| | || | ||| ||| || |||||||    
T  33726201 aaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttca 33726102  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    |||||||||||||||||||||| || |||||||||||| ||||| ||||||| |||||||| ||||||| |||||| ||||||||    
T  33726101 tctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 3690686 - 3690788
Alignment:
Q  161 atcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtat 260  Q
    ||||||||| | | ||||||||||||| ||| |||| ||||| |||||||| ||||||||||| | ||| | ||||||||||||||| || |||||||||    
T  3690686 atcatcacctcatctcatctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtat 3690785  T
Q  261 aag 263  Q
    |||    
T  3690786 aag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 42668838 - 42668952
Alignment:
Q  133 tagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatgg 232  Q
    ||||| |||| ||||||||| | || ||| ||||||| || | ||| |||||||| ||||||||||| ||||||||||| ||||||||| ||| |||  |    
T  42668838 taggggtattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtg 42668936  T
Q  233 tgtatgtcacctaagg 248  Q
    |||||| |||||||||    
T  42668937 tgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  177 atctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
    ||||||||||||||||||||||| || |||||||| ||| ||||| ||| |||  |||||||  ||||||| |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 38845073 - 38845165
Alignment:
Q  127 atgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtg 220  Q
    ||||||||||| ||||||||||||||   || | |||||||||||| || |||| |||||||||| ||||| | || |||||||| ||||||||    
T  38845073 atgtgttagggttattttagtaatttctcatcacatcatcacccctctt-atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 35849516 - 35849623
Alignment:
Q  141 ttttagtaattttatattatatcatcaccccttttcatctcttctttca--atgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatg 238  Q
    ||||| |||||| |||| | |||||| |||||| ||||||||||||| |  || ||||||| | ||||||||| |||||||   ||| ||||| ||||||    
T  35849516 ttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtgttaaatgatgtatg 35849615  T
Q  239 tcacctaa 246  Q
     |||||||    
T  35849616 ccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 46111945 - 46112131
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtaca-ccccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| ||||||| | |||| |||| |||||||| |||||| |||||||||||||||| || |||||||||||| ||||||    
T  46111945 aaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcaccctttttca 46112044  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46112045 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 34749899 - 34750086
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    ||||||||| | ||||| | |||| ||||||||||||||||||||||| |||| |||||| ||||| |||||||||| || |||||||||||| ||||||    
T  34749899 aaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 34749998  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  34749999 tctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 34750086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 21559751 - 21559564
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||| || ||||||| |||| ||||||    
T  21559751 aaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttca 21559652  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||| ||||| |||||||||||    
T  21559651 tctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagag 21559564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 22894869 - 22894683
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| ||||| ||||||||||||||||||||| ||||| |||||| ||||| ||||||| || || ||||||||| || ||||||    
T  22894869 aaaaagatagatagacacccttttc-atacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttca 22894771  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  22894770 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 22894683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 36749598 - 36749409
Alignment:
Q  77 gaaaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcacccctttt 175  Q
    |||||||||||  |||||||  |||| ||||||||| |||||||||||| ||||| |||| | ||||| |||||||||| || |||||||||||| ||||    
T  36749598 gaaaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 36749499  T
Q  176 catctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  36749498 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagag 36749409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 44000179 - 43999992
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||  |||| ||||||||| |||||||| ||| ||||| |||| | ||||| |||||||||| || |||||||||||| ||||||    
T  44000179 aaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 44000080  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  44000079 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagag 43999992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 51339785 - 51339969
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| |||| ||||||| ||||||||||||  |||||||||| | |||||||||||||||| || |||||||||||| |||||||    
T  51339785 aaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcat 51339884  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||| ||||||||||||  ||||||| ||||||| | |||||| |||||||||||||| |||||||||||    
T  51339885 ctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagag 51339969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 265
Target Start/End: Original strand, 36370359 - 36370526
Alignment:
Q  99 ttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgttttt 197  Q
    |||| ||||||||| |||| ||||||| ||||| |||||| ||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  36370359 tttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 36370458  T
Q  198 gctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |  || |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  36370459 gtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagag 36370526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 30735492 - 30735683
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatatttt-agtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  |||||||| |||| |||||||  ||||||||||| ||||||||||||| |||||| |||||||| | || |||||||||||| |    
T  30735492 taaggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctt 30735591  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||| || |||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||| || |||||||||||||| ||||||||    
T  30735592 ttt-atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagag 30735683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 73 - 266
Target Start/End: Complemental strand, 48200881 - 48200687
Alignment:
Q  73 ataagaaaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcacccc 171  Q
    ||||| |||||||||  |||||| | |||| ||||||||| ||||||||||||| |||| ||| || ||||| |||||||||| || ||||||||| ||     
T  48200881 ataaggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcct 48200782  T
Q  172 ttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagt 266  Q
    |||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||| |||||||| |||||||| || |||||| ||||||||    
T  48200781 ttttcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagagt 48200687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 38231482 - 38231296
Alignment:
Q  79 aaaaagataactagaca-cctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| |||||||  |||||| ||||||||||||||||||||| |||| || |||||| |||| | |||| || || |||  ||||||    
T  38231482 aaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacca-ttttca 38231384  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    | |||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  38231383 tatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 38231296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 39467103 - 39467286
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  || ||||| ||||  |||||| ||  ||||||||| ||||||||| ||||||||||||||||| |||| | ||| ||||||||||||||    
T  39467103 aaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcat 39467202  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||||||||||| ||||||  || |||||||||| ||||||| ||||||| ||||||||||| ||| ||||||| ||| ||||    
T  39467203 ctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataa 39467286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 29460756 - 29460663
Alignment:
Q  172 ttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 29460663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 29471608 - 29471515
Alignment:
Q  172 ttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 29471515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 20856182 - 20856334
Alignment:
Q  105 atacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgt 204  Q
    |||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||| | ||||||| || |||| || |||| ||||||||||||||| || |    
T  20856182 atacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt-atatctt-tttcaatgtttttgccacat 20856278  T
Q  205 gtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtat 260  Q
    ||||||||||||| ||| ||||||| |||||||| ||||||| |||||||||||||    
T  20856279 gtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 39072317 - 39072458
Alignment:
Q  116 atgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgt 215  Q
    ||||||||||||||||| | || |||||||||||      || | |||||||||| |||||||||||||||| ||||||| ||| || ||||||||||||    
T  39072317 atgtacaccccatgtgtcaagggtattttagtaac-----atcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgt 39072411  T
Q  216 gtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
     ||||| ||||||| ||||||||||| |||||||| |||||||||||    
T  39072412 atgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataa 39072458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 50966257 - 50966134
Alignment:
Q  138 atattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtat 237  Q
    ||||||||||||||||| |||||||||||   | |||||||||||||||||||| ||||||  ||||||||||||||||  | ||||||||| |||||||    
T  50966257 atattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtat 50966161  T
Q  238 gtcacctaaggtggttcatgtataagag 265  Q
    | |||||||| | |||||||||||||||    
T  50966160 gccacctaagat-gttcatgtataagag 50966134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 51069392 - 51069269
Alignment:
Q  138 atattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtat 237  Q
    ||||||||||||||||| |||||||||||   | |||||||||||||||||||| ||||||  ||||||||||||||||  | ||||||||| |||||||    
T  51069392 atattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtat 51069296  T
Q  238 gtcacctaaggtggttcatgtataagag 265  Q
    | |||||||| | |||||||||||||||    
T  51069295 gccacctaagat-gttcatgtataagag 51069269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 29472998 - 29472901
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttc 176  Q
    |||||||||  |||||| | |||| |||||||  |||||| |||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||    
T  29472998 aaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 53638278 - 53638157
Alignment:
Q  125 ccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatg 224  Q
    |||| ||| |||| |||||||| ||||||| || | ||||||||||| | |||||||||||||| |||||||| | || |||||| | ||||||||| ||    
T  53638278 ccatatgtcaggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtg 53638179  T
Q  225 taaaatggtgtatgtcacctaa 246  Q
    | ||| |||||||| |||||||    
T  53638178 ttaaagggtgtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 29820390 - 29820483
Alignment:
Q  168 ccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtata 261  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| ||| ||||| ||| |||  ||||||| |||||||||||||  |||||||    
T  29820390 ccccttctcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 1815655 - 1815804
Alignment:
Q  116 atgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgt 215  Q
    |||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  1815655 atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatat 1815754  T
Q  216 gtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  1815755 gtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagag 1815804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 2237466 - 2237282
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||| | || |||||| ||||| |||||||||| || |||||||||||| ||||||    
T  2237466 aaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccctttttca 2237367  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  2237366 tctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataa 2237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 39371117 - 39370930
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||| |||| |||||| ||||| |||||||||| || |||||||||||| ||||||    
T  39371117 aaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 39371018  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  39371017 tctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagag 39370930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 13347318 - 13347134
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||| ||||| |||||| ||||| ||||||| || || |||||||||| | ||||||    
T  13347318 aaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttca 13347219  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  13347218 tctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 13347134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 9408054 - 9408227
Alignment:
Q  93 acacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaat 191  Q
    ||||| |||| ||||||||||||||||||||||| || | |||||| ||||| |||||||||| || |||||||||||| ||||||||||||||||||||    
T  9408054 acaccatttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaat 9408153  T
Q  192 gtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||| ||||||||||||||||||||  ||||||| || ||||||||||| ||||||||||||||||||||    
T  9408154 gtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagag 9408227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 40887938 - 40888130
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  |||||||| |||| ||||||| ||||||||||||||| || | |||| | |||||||||||||||| || |||||| ||||| |    
T  40887938 taaggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctt 40888037  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||| |||||||||||||| |||||||||||    
T  40888038 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagag 40888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 257
Target Start/End: Complemental strand, 14831734 - 14831555
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  || ||||| |||| ||||||||||||||||||||||| | || |||||| ||||| | |||||||| || |||||||||||| ||||||    
T  14831734 aaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttca 14831635  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatg 257  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  14831634 tctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 265
Target Start/End: Original strand, 27553386 - 27553561
Alignment:
Q  90 tagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttca 189  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||||  |||||||||||||||| || | || ||||||  ||||| ||||||||||||    
T  27553386 tagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttca 27553485  T
Q  190 atgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||||  |||||||||||||||||    
T  27553486 atgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagag 27553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 31800735 - 31800597
Alignment:
Q  91 agacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaa 190  Q
    ||||||| |||| ||||||| |||| |||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  31800735 agacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcatcttttctttcaa 31800636  T
Q  191 tgtttttgctacgtgtcacaaatgtgtgtggatgtaaaa 229  Q
    | ||||||| |||||||| |||||||||||| |||||||    
T  31800635 tatttttgccacgtgtcataaatgtgtgtgggtgtaaaa 31800597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 112 - 262
Target Start/End: Original strand, 19596103 - 19596252
Alignment:
Q  112 tcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaa 211  Q
    ||||||||||||||||||||| |||| || |||||| |||| | |||| || |||||   |||||| ||||||||||||||||||||| || ||||||||    
T  19596103 tcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcacta-ttttcacctcttctttcaatgtttttgccacatgtcacaa 19596201  T
Q  212 atgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  19596202 atgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataa 19596252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 33404531 - 33404624
Alignment:
Q  172 ttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagag 33404624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 17225461 - 17225322
Alignment:
Q  124 cccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggat 223  Q
    ||||||| | |||| |||||||||||||| | || | ||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||||| |    
T  17225461 cccatgtatcaggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggt 17225362  T
Q  224 gtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||  | ||||| ||||||| ||||||||||||||||||    
T  17225361 gtaaaa--gagtatgccacctaaagtggttcatgtataagag 17225322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 4300582 - 4300731
Alignment:
Q  116 atgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgt 215  Q
    ||||||||| |||||||||||||||||||| |||||| | || | |||| ||||  |||| ||||||| ||||||||||||||| |  |||||||||| |    
T  4300582 atgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatat 4300681  T
Q  216 gtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||| ||||||| | | ||||||||||||  |||||||||||||||||    
T  4300682 gtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagag 4300731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14626634 - 14626694
Alignment:
Q  1 ctgaatgtggggacatacttatcctatattgggtgggagccttatcctgttatccactatt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14626634 ctgaatgtggggacatacttatcctatattgggtgggagccttatcctgttatccactatt 14626694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 41003879 - 41004031
Alignment:
Q  105 atacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgt 204  Q
    |||||| ||| ||||||||||||| ||| |||||||||| |||||||||| || | ||||||| ||||||| || |||| ||||||| ||||||| || |    
T  41003879 atacacctctcatgtacaccccatatgtcagggatattt-agtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacat 41003976  T
Q  205 gtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgta 259  Q
    |||| |||||||| ||  ||||||| |||||||| ||||||| ||||||||||||    
T  41003977 gtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 42683789 - 42683670
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| | |||| ||||||| ||||||||||||||| || | |||||| |||||||||||||||| || |||||| || || ||||||    
T  42683789 aaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttca 42683690  T
Q  178 tctcttctttcaatgttttt 197  Q
    ||||||||||||||||||||    
T  42683689 tctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 19124534 - 19124657
Alignment:
Q  139 tattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatg 238  Q
    |||||||||||||||| || ||||||||||    ||||||||||||||| ||||||||||| ||  ||||||| ||||||||| ||| |||| |||||||    
T  19124534 tattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgtcaaat-gtgtatg 19124631  T
Q  239 tcacctaaggtggttcatgtataaga 264  Q
     || ||||| | || |||||||||||    
T  19124632 ccatctaagatagtccatgtataaga 19124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 87164 - 87350
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatat--tatatcatcaccccttttc 176  Q
    |||||||||  ||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||   |||||    
T  87164 aaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttttc 87263  T
Q  177 atctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||    
T  87264 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 26972199 - 26972391
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  |||||||| |||| ||||||||||||||||||||||| |||| |||||| ||||| |||||||||| || |||||||||||| |    
T  26972199 taaggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctt 26972298  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  26972299 tttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 26972391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 45782656 - 45782848
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacac-cccatgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  |||||||| ||||  |||||||| |||||||||| |||||||||||||| |||||||||||||||| || |||||||||||| |    
T  45782656 taaggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctt 45782755  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||| |||||| ||||||| |||||| |||||||||||    
T  45782756 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagag 45782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 71 - 265
Target Start/End: Original strand, 42220957 - 42221151
Alignment:
Q  71 aaataagaaaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatatttt-agtaattttatattatatcatcacc 169  Q
    ||||||| |||||||||  |||||||||||||| ||||||  ||||||||||| ||||||||||||| |||||| |||||||| | || |||||||||||    
T  42220957 aaataaggaaaaagataggtagacacctttttc-atacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacc 42221055  T
Q  170 ccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||    
T  42221056 cctttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagag 42221151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 28307496 - 28307683
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacacccc-atgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||| |||||| ||||||| ||||||||||||||| || ||||| || |||||||||||||||| || |||||||||||| ||||||    
T  28307496 aaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttttca 28307595  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||    
T  28307596 tctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagag 28307683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 34828254 - 34828068
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | |||| |||||||  |||||| ||||||||| |||||||| |||||||||||||||| || ||||||||| | ||||||||    
T  34828254 aaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcat 34828155  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagt 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  34828154 ctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagagt 34828068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 36346566 - 36346752
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| |||| ||||||| |||||||||||||| |||||||||||| |||||||||||||||| || |||||||||||  ||||||    
T  36346566 aaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-ttttca 36346664  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||| ||||| |||||||||||    
T  36346665 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagag 36346752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 79 - 271
Target Start/End: Complemental strand, 31148479 - 31148287
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||  |||| ||||||| ||||||  ||||||||| |||||||  |||||||||||||||| || |||||||||||| |||||||    
T  31148479 aaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttcat 31148380  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagtccttt 271  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||| || |||||    
T  31148379 ctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaaagcccttt 31148287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 34108616 - 34108429
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacac-cccatgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  || ||||| |||| |||||||||||||||||||| ||||||| |||||| ||||| |||||||||| || |||||||||||| ||||||    
T  34108616 aaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 34108517  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||| |||||||||||||  |  |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  34108516 tctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagag 34108429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 91 - 265
Target Start/End: Complemental strand, 30887877 - 30887703
Alignment:
Q  91 agacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaa 190  Q
    ||||||| |||| |||||||||||||| |||||||||||| |||| | ||||| |||||||||| || |||||||||||| ||||||||||||| |||||    
T  30887877 agacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaa 30887778  T
Q  191 tgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||||||||||||||||||||||||| ||||| |||||||  ||||||| |||||||| | |||||||||||||||    
T  30887777 tgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagag 30887703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 7699884 - 7700071
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  || ||||| |||| ||||||| |||||| ||||||  ||||||||| || ||||||||||||||||||| ||||||||| || |||| |    
T  7699884 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7699983  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||    
T  7699984 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagag 7700071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 7700082 - 7700269
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  || ||||| |||| ||||||| |||||| ||||||  ||||||||| || ||||||||||||||||||| ||||||||| || |||| |    
T  7700082 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7700181  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||    
T  7700182 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagag 7700269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 7700280 - 7700467
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  || ||||| |||| ||||||| |||||| ||||||  ||||||||| || ||||||||||||||||||| ||||||||| || |||| |    
T  7700280 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7700379  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||    
T  7700380 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagag 7700467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 7700478 - 7700665
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccc-catgtgttagggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  || ||||| |||| ||||||| |||||| ||||||  ||||||||| || ||||||||||||||||||| ||||||||| || |||| |    
T  7700478 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7700577  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| || ||||||||||| |||||||||||    
T  7700578 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagag 7700665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 5811165 - 5811348
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| ||||  |||||| ||  ||||||||| |||||||||||| |||||||||||||| | || | ||| ||||||||||||||    
T  5811165 aaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcat 5811264  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||||||||||||||||||| || |||||||||||||||||| || |||| | |||||| |||||| ||||||| ||||||||    
T  5811265 ctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataa 5811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 105 - 264
Target Start/End: Original strand, 21807350 - 21807509
Alignment:
Q  105 atacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgt 204  Q
    |||||||||| || ||||||||| ||||||||| |||||||||||||| | || | ||||||| || |||||||||||||||||||| ||||||| || |    
T  21807350 atacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacat 21807449  T
Q  205 gtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataaga 264  Q
     |||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  21807450 atcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 13108336 - 13108154
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| ||||  |||||| | | ||||||||| |||||||||||| |||||||||||||| | || | ||| |||||||||| |||    
T  13108336 aaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-cat 13108238  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    |||||||||||| |||||||| || |||||||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||    
T  13108237 ctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataa 13108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 116 - 262
Target Start/End: Complemental strand, 23980283 - 23980137
Alignment:
Q  116 atgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgt 215  Q
    ||||||| | ||| |||||| | |||||||||||||| | || | ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  23980283 atgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgt 23980184  T
Q  216 gtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    |||||| ||||||| |||||||| |||||| ||||||| ||||||||    
T  23980183 gtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 46475214 - 46475066
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgtta-gggatattttagtaattttatattatatcatcaccccttttca 177  Q
    |||||||||  |||||||| ||||  |||||| ||| ||||||| | ||||||||| ||| |||||||||||||| | || | ||| |||||||||||||    
T  46475214 aaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccccttttca 46475115  T
Q  178 tctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgta 226  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  46475114 tctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 36957573 - 36957450
Alignment:
Q  124 cccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggat 223  Q
    |||||||||| ||| |||||||||||||||| |||| || |||| || ||||||||||||||| |||| ||||||  ||||||||||||| ||| |||||    
T  36957573 cccatgtgttgggggtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggat 36957474  T
Q  224 gtaaaatggtgtatgtcacctaag 247  Q
    |||||| |||||||| ||||||||    
T  36957473 gtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 15020421 - 15020288
Alignment:
Q  126 catgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 225  Q
    ||||||||||||||||||||||||||| | || ||||| ||||||| |||| |||||||||||||||||||||| |  |||||||||  ||||||| |||    
T  15020421 catgtgttagggatattttagtaatttcacatcatatcttcacccc-tttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgtgtgggtgt 15020325  T
Q  226 aaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    |||| | |||||| |||||| ||||||| ||||||||    
T  15020324 aaaaggttgtatgccacctatggtggtttatgtataa 15020288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 263
Target Start/End: Complemental strand, 38321155 - 38321014
Alignment:
Q  122 accccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtgg 221  Q
    ||||||||||  ||||||||||||||| ||| | || | | ||||||| | | |||| |||||||||||||||||||| || |||||||| ||| |||||    
T  38321155 accccatgtggcagggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgg 38321056  T
Q  222 atgtaaaatggtgtatgtcacctaaggtggttcatgtataag 263  Q
     ||| |||  ||||||| |||||||| ||||| |||||||||    
T  38321055 gtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 20086687 - 20086780
Alignment:
Q  136 ggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaa 229  Q
    ||||||||||||||||| | || | ||||||||||||||| ||||||||||| ||||||||||| |  |||| ||||||| ||||| |||||||    
T  20086687 ggatattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaa 20086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 29953560 - 29953665
Alignment:
Q  66 gttttaaataagaaaaaagataactagacacctttttccatacacttcttatgtacacc-ccatgtgttagggatattttagtaattttatattatatca 164  Q
    ||||| || ||| |||||||||  |||||||| |||| ||||||||||||||||| ||  |||||| |||||||||||| |||||||||| || ||||||    
T  29953560 gttttcaaaaaggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatca 29953659  T
Q  165 tcaccc 170  Q
    ||||||    
T  29953660 tcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgta 226  Q
    ||||||||||| ||||||||| ||||| || | |||||||||||||||| ||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 38160639 - 38160607
Alignment:
Q  117 tgtacaccccatgtgttagggatattttagtaa 149  Q
    |||||||||||||| ||||||||||||||||||    
T  38160639 tgtacaccccatgtattagggatattttagtaa 38160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 79 - 276
Target Start/End: Original strand, 3986907 - 3987104
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | |||| |||||| || ||||||| ||||||||| ||| || ||||| |||||||||| || |||| |||| ||||||||||    
T  3986907 aaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttcat 3987006  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagagtcctttaaata 276  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||  |||||||||    
T  3987007 ctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctttaaata 3987104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 13697737 - 13697572
Alignment:
Q  99 ttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttg 198  Q
    |||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||     
T  13697737 tttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctcttctttcaatgttttta 13697638  T
Q  199 ctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    | |||| |||||||||||| ||| ||||||| |||| |||||| ||||| ||||| |||||||||||    
T  13697637 ccacgtatcacaaatgtgtatgg-tgtaaaagggtgcatgtcatctaagatggtttatgtataagag 13697572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 14023123 - 14022940
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||||| ||||  |||||| ||  ||||||||| |||||||||||| |||||||||||||| | || | ||| ||||||||| ||||    
T  14023123 aaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcat 14023024  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||    
T  14023023 ctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataa 14022940  T

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Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 3118043 - 3118235
Alignment:
Q  74 taagaaaaaagataactagacacctttttccatacacttcttatgtacac-cccatgtgttagggatattttagtaattttatattatatcatcacccct 172  Q
    |||| |||||||||  |||||| | |||| ||||||  |||||||||||| ||||||| |||||| |||||||||||||||| || || ||| ||||| |    
T  3118043 taaggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccaccctt 3118142  T
Q  173 tttcatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    ||| |||| |||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||| ||||||||    
T  3118143 ttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagag 3118235  T

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Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 265
Target Start/End: Original strand, 15345672 - 15345845
Alignment:
Q  90 tagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcatctcttctttca 189  Q
    |||||| |||||| |||||||||||||||||||||| |||| ||||||  |||| |||||||| |||| |||||||||||  ||||||||| ||||||||    
T  15345672 tagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttcatcttttctttca 15345771  T
Q  190 atgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataagag 265  Q
    |||||||||| ||||||||||||  ||| ||| |||||||  || |||| |||||||||||||| |||||||||||    
T  15345772 atgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagag 15345845  T

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Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 24208633 - 24208450
Alignment:
Q  79 aaaaagataactagacacctttttccatacacttcttatgtacaccccatgtgttagggatattttagtaattttatattatatcatcaccccttttcat 178  Q
    |||||||||  |||||| | ||||  |||||| ||| || |||||| |||||||||||| |||||||||||||| | || | ||| |||||| |||||||    
T  24208633 aaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcat 24208534  T
Q  179 ctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaaggtggttcatgtataa 262  Q
    ||||||||||||||||||||| || | |||||||||||||||| |||||||| ||||||  |||||| | ||||| ||||||||    
T  24208533 ctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataa 24208450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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