View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_100 (Length: 302)
Name: NF18404_high_100
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 6709379 - 6709100
Alignment:
| Q |
18 |
ggaagcacatggcttaagcaagaatgtcttacaatataagcccacgtcgcagtgtttcgattcttgggtcgtgtgtgagacaccatcatcatcatgcatg |
117 |
Q |
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| T |
6709379 |
ggaagcacatggcttaagcaagaatgtcttacaatataagcccacgtcgcagtgtttcgattcttgggtcgtgtgtgagacaccatcatcatcatgcatg |
6709280 |
T |
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| Q |
118 |
ccaaatnnnnnnngtcatataatattttatttattatttctttataattgcctcttataatcaatttaatgacaatgtccttttattatagtatacctat |
217 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6709279 |
ccaaataaaaaaagtcatataatattctatttattatttctttataattgcctcttataatcaatttaatgacaatgtccttttattatagtatacctat |
6709180 |
T |
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| Q |
218 |
ttgtctttctatatttctatgttacatattcttgacaggtaggtcatcatgccctcccacttaaattagttatattcttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6709179 |
ttgtctttctatatttctatgttacatattcttgacaggtaggtcatcatgccctcccacttaaattagttatattcttc |
6709100 |
T |
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