View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_105 (Length: 296)
Name: NF18404_high_105
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_105 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 30343 - 30610
Alignment:
| Q |
21 |
actcctttcagttctcaatgtaggttggcttacgctatgtgatcaggacctcaacattcctaaaaaattagcttcttctcagcaaccaaatccatggcat |
120 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30343 |
actcctttcagttctcaatgtaggctggcttacgctatgtgataaggacctcaacattcctaaaaaattagcttcttttcagcaaccaaatccatggcat |
30442 |
T |
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| Q |
121 |
tgctgctattcaaacttctatgtttgtctcatatttatatgaatcagctaagaacttcgggaaatatctctctgcacatgttgtaaaagcagaatgtgaa |
220 |
Q |
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| T |
30443 |
tgctgctattcaaacttatgtgtttgtctcatatttatatgaatcagctaagaactccgggaaatatctctctgcacatgttgtaaaagcagaatatgaa |
30542 |
T |
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| Q |
221 |
tgtttagtgacatggaaatggggatagcaacaacacgcacaagagaaatataaagggttctttcatct |
288 |
Q |
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| T |
30543 |
tgtttagtgacatggaaatggggatagcaacaacgcgcacaagagaaatataaagggttctttcatct |
30610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 12533122 - 12532856
Alignment:
| Q |
21 |
actcctttcagttctcaatgtaggttggcttacgctatgtgatcaggacctcaacattcctaaaaaattagcttcttctcagcaaccaaatccatggcat |
120 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12533122 |
actcctttcagttctcaatgtacgttggcttacgctatgtgataaggacctcaacattcctaaaaaattagcttcttctcagcaaccaaatccatggcat |
12533023 |
T |
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| Q |
121 |
tgctgctattcaaacttctatgtttgtctcatatttatatgaatcagctaagaacttcgggaaatatctctctgcacatgttgtaaaagcagaatgtgaa |
220 |
Q |
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| T |
12533022 |
tgctgctattcaaacttatgtgtttgtctcatatttatatgaatcagctaagaactccgggaaatatctctttgcacatgttgtaaaagcagaatatgaa |
12532923 |
T |
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| Q |
221 |
tgtttagtgacatggaaatggggatagcaacaacacgcacaagagaaatataaagggttctttcatct |
288 |
Q |
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| T |
12532922 |
tg-ttagtgacatggaaatggggatagcaacaacgcgcacaagagaaatataaagggttctttcatct |
12532856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 38578539 - 38578487
Alignment:
| Q |
122 |
gctgctattcaaacttctatgtttgtctcatatttatatgaatcagctaagaa |
174 |
Q |
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| T |
38578539 |
gctgctattcatacttatgtgtttgtctcatatctgtatgaatccgctaagaa |
38578487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 24430619 - 24430550
Alignment:
| Q |
219 |
aatgtttagtgacatggaaatggggatagcaacaacacgcacaagagaaatataaagggttctttcatct |
288 |
Q |
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|||||||||||||||||| || ||||||||||| | ||||||||| ||||||| ||||||||||||| |
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| T |
24430619 |
aatgtttagtgacatggagatagggatagcaactgagcacacaagagacatataaaaggttctttcatct |
24430550 |
T |
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