View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_11 (Length: 671)
Name: NF18404_high_11
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 463 - 671
Target Start/End: Complemental strand, 490598 - 490391
Alignment:
| Q |
463 |
tctttgacagaacaaaaagaagcgtagttaataaaagagttaaagaaacatgatgtaaattttttagggacaacaatatgatccatcaaatatatattca |
562 |
Q |
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| T |
490598 |
tctttgacagaacaaaaagaagcatagttaataaaagagttaaagaaacatgatgtaaatttttaagggacaacaatatgatc-atcaaatatatattca |
490500 |
T |
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| Q |
563 |
ccacggagaagaaagaaatggagataaagaaaatgacatttattagaaactagacgttctgaatgacaaaagttacttccttcaccacagaaggtaaaac |
662 |
Q |
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| T |
490499 |
ccacagaaaagaaagaaatggagataaagaaaatgacatttattagaaactagatgttctgaatgacaaaagttacttccttcaccacagaaggtaaaac |
490400 |
T |
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| Q |
663 |
taaaaagca |
671 |
Q |
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||||||||| |
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| T |
490399 |
taaaaagca |
490391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 491863 - 491688
Alignment:
| Q |
50 |
tatacatcatcaacctttcccgtttctcactcattatctggaattcctccctcgacctctcttacttttgcggtgacctagacgagcttcttggagaaat |
149 |
Q |
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| T |
491863 |
tatacatcatcaaccgttcccgtttctcactcattatctggaattcctccctcgacctctcttactttcgcggtgacctagacgagcttcttggagaaat |
491764 |
T |
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| Q |
150 |
ctctagttgttttccacttaaaatcacgtcactcaatcttggagagcttctttcaacattaaatctatcggtatccctc |
228 |
Q |
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| T |
491763 |
ctcta---gttttccacttaaaatcacgtcactcaatcttggagagcttcttgcaacattaaatctatcggtatccctc |
491688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 312 - 466
Target Start/End: Complemental strand, 491147 - 490988
Alignment:
| Q |
312 |
atttattttaaaactgacatgatttttatttt-----gtttcgacttgccaactgtgaatacttcgctatggttttgtttgccttgcattatattcattt |
406 |
Q |
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| T |
491147 |
atttattttacaactgacatgatttttattttattttgtttcgacttgccaactgtgaatatttcgctatggttttgtttgccttgcattatattcattt |
491048 |
T |
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| Q |
407 |
tctaccaatgattttgttcatgttatcctgcttctctaactcttctattgttcttgtctt |
466 |
Q |
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| T |
491047 |
tctaccaatgattttggtcatgttatcctgcttctctaactcttctattgttcttgtctt |
490988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 491652 - 491615
Alignment:
| Q |
267 |
ctgaggaaggtattggtcaaattttaattaaggagata |
304 |
Q |
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| T |
491652 |
ctgaggaaggtattggtcaaattttaattaaggagata |
491615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 520
Target Start/End: Original strand, 1492590 - 1492628
Alignment:
| Q |
482 |
aagcgtagttaataaaagagttaaagaaacatgatgtaa |
520 |
Q |
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| T |
1492590 |
aagcatagttaataaaagagttaaagaaatatgatgtaa |
1492628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 517
Target Start/End: Original strand, 1530660 - 1530705
Alignment:
| Q |
472 |
gaacaaaaagaagcgtagttaataaaagagttaaagaaacatgatg |
517 |
Q |
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| T |
1530660 |
gaacaaaaagaattatagttaataaaagagttaaagaaatatgatg |
1530705 |
T |
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