View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_111 (Length: 284)
Name: NF18404_high_111
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_111 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 36152560 - 36152833
Alignment:
| Q |
1 |
ccaaatatagaagatacatactaaatatgaaatatatttacatattctaatacgcatcaatccaatttcttatttaattttttcttaaaagaaagagcaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152560 |
ccaaatatagaagatagatactaaatatgaaatatatttacatattctaatacgcgtcaatccaatttcttatttaattttttcttaaaagaaagagcaa |
36152659 |
T |
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| Q |
101 |
gagctcttgaccatacatgagtgtagataattattttatttgtttcctaggtcatatttagtattcttctacaaaagaagttgtaatagatatagcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152660 |
gagctcttgaccatacatgagtgtagataattattttatttgtttcctaggtcatatttagtattcttctacaaaagaagttgtaatagatatagcagaa |
36152759 |
T |
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| Q |
201 |
atagaccatagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgttcatctca |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152760 |
atagaccatagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgttcatctca |
36152833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 36157486 - 36157769
Alignment:
| Q |
1 |
ccaaatatagaagatacatactaa---atatgaaatatatttacatattctaatacgcatcaatccaatttcttatttaattttttcttaaaagaaagag |
97 |
Q |
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|||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||| |
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| T |
36157486 |
ccaaatatagaagatacatactaataaatataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagag |
36157585 |
T |
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| Q |
98 |
caagagctcttgaccatacatgagtgtagataattattttatttgtttcct---aggtcatatttagtattcttctacaaaagaagttgtaatagatata |
194 |
Q |
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| T |
36157586 |
caagaactcctgaccatacatgagtgtagataa-taatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatag--ata |
36157682 |
T |
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| Q |
195 |
gcagaaatagacc-------atagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgttcatctca |
274 |
Q |
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||||||||| ||| | ||||||||| |||| ||||| | ||||||||||| |||||||||||| |||||||||||||| |
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| T |
36157683 |
gcagaaataaaccacagtcaacagagagacaaaagatcaaatcatggacaattcaggccaggcacttacattattttgttcatctca |
36157769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 26952732 - 26952781
Alignment:
| Q |
3 |
aaatatagaagatacatactaaatatgaaatatatttacatattctaata |
52 |
Q |
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||||||| ||||||||||||| |||| ||||||||||||||||| ||||| |
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| T |
26952732 |
aaatataaaagatacatactacatataaaatatatttacatattttaata |
26952781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 41708321 - 41708272
Alignment:
| Q |
3 |
aaatatagaagatacatactaaatatgaaatatatttacatattctaata |
52 |
Q |
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||||||| |||||||||||||||||| || |||||| |||||||||||| |
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| T |
41708321 |
aaatatataagatacatactaaatataaatgatatttgcatattctaata |
41708272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 46586866 - 46586826
Alignment:
| Q |
11 |
aagatacatactaaatatgaaatatatttacatattctaat |
51 |
Q |
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| T |
46586866 |
aagatacatactaaatataaaagatatttacctattctaat |
46586826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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