View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_116 (Length: 273)
Name: NF18404_high_116
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_116 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 39554999 - 39554760
Alignment:
| Q |
19 |
gtgctaacaagaatgtctccaaaatagatatagaaaattagcatatgattatatttgttcactactaaaattaccataattcttatgaacagtgaaataa |
118 |
Q |
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| T |
39554999 |
gtgctaacaacaatgtctccaaaatagatatagaaaattagcatatgattatatttgttcactactaaaattaccataattcttatgaacagtgaaataa |
39554900 |
T |
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| Q |
119 |
aatttcttaaatcccaagagttgactaataactcgtattatgccattgnnnnnnngtaagnnnnnnnnnncacaccaaattgttcataatttatttgact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
39554899 |
aatttcttaaatcccaagagttgactaataactcgtattatgccattgtttttttgtaag-aaaaaaaaacacaccaaattgttcataatttatttgact |
39554801 |
T |
|
| Q |
219 |
accctacaggctccaaacaaaatatcccatatataattctt |
259 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
39554800 |
accctacaagctccaaacaaaatatcccatatataattctt |
39554760 |
T |
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