View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_119 (Length: 272)
Name: NF18404_high_119
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_119 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 54229190 - 54229303
Alignment:
| Q |
1 |
agagcaagtaatcatagcccaactacaagggtcaacagagaattcatcccagttgcttaatacattgtgtggatcatttagtgcttctttaatactcatc |
100 |
Q |
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| T |
54229190 |
agagcaagtaatcatagcccaactacaagggtcaacagagaattcatcccagttgcttaatacattgtgtggatcatttagtgcttctttaatactcatc |
54229289 |
T |
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| Q |
101 |
aaagcaaccactgc |
114 |
Q |
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|||||||||||||| |
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| T |
54229290 |
aaagcaaccactgc |
54229303 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 54229386 - 54229457
Alignment:
| Q |
182 |
gcaagtagtaccttcggggttgcgaggctctgaagcggaagagaaaggttggtgggagaggaataagaagaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54229386 |
gcaagtagtaccttcggggttgcgaggctctgaagcggaagagaaaggttggtgggagaggaataagaagaa |
54229457 |
T |
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