View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_120 (Length: 271)
Name: NF18404_high_120
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_120 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 2929794 - 2929593
Alignment:
| Q |
2 |
tttccctctctgaaagtatgctggatggagtaattacggctgtctaacatgtccttaatatcttgaattaacacaaaatagatatgaaaccgcggcatgt |
101 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2929794 |
tttccctctctgggagtatgctggatggagtaattacggctgtctaacatgtccttaatatcttgaattaacacaaaataaatatgaaaccgcggcatgt |
2929695 |
T |
|
| Q |
102 |
taacagagatgagattgatggagatgagatttgaacatatgtaagtttcttgttaagcatatcaattaaactcttccaccaatctattacatcgagggca |
201 |
Q |
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|||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2929694 |
taacagagat----------------agatttgaacatatattagtttcttgttaagcatatcaattaaactcttccactagtctattacatcgagggca |
2929611 |
T |
|
| Q |
202 |
tttgattaactcttccaa |
219 |
Q |
| |
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|||||||||||||||||| |
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| T |
2929610 |
tttgattaactcttccaa |
2929593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 33338505 - 33338633
Alignment:
| Q |
2 |
tttccctctctgaaagtatgctggatggagtaattacggctgtctaacatgtccttaatatcttgaattaacacaaaatagatatgaaaccgcggcatgt |
101 |
Q |
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||||||||||||| ||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | ||| |
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| T |
33338505 |
tttccctctctgagagtatgctggaggaagtaattacggttgtctaacatgtctttaatatcttgaattaacacaacatagatatgaaaccgcgtcgtgt |
33338604 |
T |
|
| Q |
102 |
taacagagatgagattgatggagatgaga |
130 |
Q |
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||||| |||||||||||||||||| |||| |
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| T |
33338605 |
taacaaagatgagattgatggagaggaga |
33338633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 37999162 - 37999276
Alignment:
| Q |
7 |
ctctctgaaagtatgctggatggagtaattacggctgtctaacatgtccttaatatcttgaattaacacaaaatagatatgaaaccgcggcatgttaaca |
106 |
Q |
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|||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||| |
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| T |
37999162 |
ctctctgagagtatgccagtgggagtaattacggttgtctaacatgtccttaatatcttgaattaacacagcataggtatgaaacagcgacatgttaaca |
37999261 |
T |
|
| Q |
107 |
gagatgagattgatg |
121 |
Q |
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|||||||||||||| |
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| T |
37999262 |
aagatgagattgatg |
37999276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 21390188 - 21390070
Alignment:
| Q |
5 |
ccctctctgaaagtatgctggatggagtaattacggctgtctaacatgtccttaatatcttgaattaacacaaaatagatatgaaaccgcggcatgttaa |
104 |
Q |
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||||||||| |||||||||||| |||||||| ||| || |||||| |||||||||||| || |||| ||||| ||| ||||||||||||||| ||||| |
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| T |
21390188 |
ccctctctgcaagtatgctggagagagtaattgcggatggctaacaagtccttaatatcatggattaccacaacatatatatgaaaccgcggcgtgttat |
21390089 |
T |
|
| Q |
105 |
cagagatgagattgatgga |
123 |
Q |
| |
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||| |||||||||||||| |
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| T |
21390088 |
tagatatgagattgatgga |
21390070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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